- using R Under development (unstable) (2024-06-27 r86848)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 18.1.8
flang-new version 18.1.8
- running under: Fedora Linux 36 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘visualpred/DESCRIPTION’ ... OK
- this is package ‘visualpred’ version ‘0.1.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘visualpred’ can be installed ... [20s/27s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [29s/30s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [94s/91s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘Advanced.Rmd’ using knitr
** Processing: figure/unnamed-chunk-2-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 59332 bytes
Input file size = 59494 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49854
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49854
Output IDAT size = 49854 bytes (9478 bytes decrease)
Output file size = 49932 bytes (9562 bytes = 16.07% decrease)
** Processing: figure/unnamed-chunk-3-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 61005 bytes
Input file size = 61167 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50924
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50924
Output IDAT size = 50924 bytes (10081 bytes decrease)
Output file size = 51002 bytes (10165 bytes = 16.62% decrease)
** Processing: figure/unnamed-chunk-4-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 79376 bytes
Input file size = 79562 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69383
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69383
Output IDAT size = 69383 bytes (9993 bytes decrease)
Output file size = 69461 bytes (10101 bytes = 12.70% decrease)
** Processing: figure/unnamed-chunk-5-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 85904 bytes
Input file size = 86102 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74310
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74310
Output IDAT size = 74310 bytes (11594 bytes decrease)
Output file size = 74388 bytes (11714 bytes = 13.60% decrease)
** Processing: figure/unnamed-chunk-5-2.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 82133 bytes
Input file size = 82331 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526
Output IDAT size = 79526 bytes (2607 bytes decrease)
Output file size = 79604 bytes (2727 bytes = 3.31% decrease)
** Processing: figure/unnamed-chunk-5-3.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54778 bytes
Input file size = 54928 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48981
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48981
Output IDAT size = 48981 bytes (5797 bytes decrease)
Output file size = 49059 bytes (5869 bytes = 10.68% decrease)
** Processing: figure/unnamed-chunk-5-4.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 46664 bytes
Input file size = 46802 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876
Output IDAT size = 44876 bytes (1788 bytes decrease)
Output file size = 44954 bytes (1848 bytes = 3.95% decrease)
--- finished re-building ‘Advanced.Rmd’
--- re-building ‘Basic_example.Rmd’ using knitr
** Processing: figure/unnamed-chunk-3-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55830 bytes
Input file size = 55980 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46602
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46602
Output IDAT size = 46602 bytes (9228 bytes decrease)
Output file size = 46680 bytes (9300 bytes = 16.61% decrease)
** Processing: figure/unnamed-chunk-4-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 57771 bytes
Input file size = 57933 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48942
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48942
Output IDAT size = 48942 bytes (8829 bytes decrease)
Output file size = 49020 bytes (8913 bytes = 15.39% decrease)
** Processing: figure/unnamed-chunk-5-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 75564 bytes
Input file size = 75750 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62174
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62174
Output IDAT size = 62174 bytes (13390 bytes decrease)
Output file size = 62252 bytes (13498 bytes = 17.82% decrease)
** Processing: figure/unnamed-chunk-6-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 76646 bytes
Input file size = 76832 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63957
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63957
Output IDAT size = 63957 bytes (12689 bytes decrease)
Output file size = 64035 bytes (12797 bytes = 16.66% decrease)
** Processing: figure/unnamed-chunk-7-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 53035 bytes
Input file size = 53185 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579
Output IDAT size = 45579 bytes (7456 bytes decrease)
Output file size = 45657 bytes (7528 bytes = 14.15% decrease)
** Processing: figure/unnamed-chunk-8-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51673 bytes
Input file size = 51823 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43346
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43346
Output IDAT size = 43346 bytes (8327 bytes decrease)
Output file size = 43424 bytes (8399 bytes = 16.21% decrease)
** Processing: figure/unnamed-chunk-10-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 115352 bytes
Input file size = 115598 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98873
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98873
Output IDAT size = 98873 bytes (16479 bytes decrease)
Output file size = 98951 bytes (16647 bytes = 14.40% decrease)
** Processing: figure/unnamed-chunk-11-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 173493 bytes
Input file size = 173823 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146958
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146958
Output IDAT size = 146958 bytes (26535 bytes decrease)
Output file size = 147036 bytes (26787 bytes = 15.41% decrease)
** Processing: figure/unnamed-chunk-13-1.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 122190 bytes
Input file size = 122436 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103770
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103770
Output IDAT size = 103770 bytes (18420 bytes decrease)
Output file size = 103848 bytes (18588 bytes = 15.18% decrease)
** Processing: figure/unnamed-chunk-13-2.png
771x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 146263 bytes
Input file size = 146545 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124620
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124620
Output IDAT size = 124620 bytes (21643 bytes decrease)
Output file size = 124698 bytes (21847 bytes = 14.91% decrease)
--- finished re-building ‘Basic_example.Rmd’
--- re-building ‘Comparing.Rmd’ using knitr
Quitting from lines 34-58 [unnamed-chunk-2] (Comparing.Rmd)
Error: processing vignette 'Comparing.Rmd' failed with diagnostics:
Bernoulli requires the response to be numeric in {0,1}
--- failed re-building ‘Comparing.Rmd’
--- re-building ‘Outliers.Rmd’ using knitr
Warning: ggrepel: 1 unlabeled data points (too many overlaps). Consider increasing max.overlaps
** Processing: figure/unnamed-chunk-3-1.png
900x700 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 178087 bytes
Input file size = 178417 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145702
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145702
Output IDAT size = 145702 bytes (32385 bytes decrease)
Output file size = 145780 bytes (32637 bytes = 18.29% decrease)
Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps
** Processing: figure/unnamed-chunk-4-1.png
900x700 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 156266 bytes
Input file size = 156572 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133909
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133909
Output IDAT size = 133909 bytes (22357 bytes decrease)
Output file size = 133987 bytes (22585 bytes = 14.42% decrease)
** Processing: figure/unnamed-chunk-4-2.png
900x700 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 133240 bytes
Input file size = 133510 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119427
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119427
Output IDAT size = 119427 bytes (13813 bytes decrease)
Output file size = 119505 bytes (14005 bytes = 10.49% decrease)
** Processing: figure/unnamed-chunk-4-3.png
900x700 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 124654 bytes
Input file size = 124912 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107160
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107160
Output IDAT size = 107160 bytes (17494 bytes decrease)
Output file size = 107238 bytes (17674 bytes = 14.15% decrease)
--- finished re-building ‘Outliers.Rmd’
SUMMARY: processing the following file failed:
‘Comparing.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR