* installing *source* package ‘unigd’ ...
** package ‘unigd’ successfully unpacked and MD5 sums checked
** using staged installation
Found pkg-config cflags and libs!
Using PKG_CFLAGS=-I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread
Using PKG_LIBS=-lcairo -lfreetype
Using PKG_LIBTIFF_CFLAGS=
Using PKG_LIBTIFF_LIBS=-ltiff -ltiffxx
------------------------------[ WARNING ]---------------------------
Info: Configuration failed to find libtiff-4 system library.
httpgd is fully functional without libtiff-4, but some plot file formats
will not be available.
If you want to install libtiff-4 see below error for troubleshooting.
------------------------- ANTICONF ERROR ---------------------------
Configuration failed because libtiff-4 was not found. Try installing:
* deb: libtiff-dev (Debian, Ubuntu, etc)
* rpm: libtiff-devel (Fedora, EPEL)
* brew: libtiff (OSX)
If libtiff-4 is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a libtiff-4.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
--------------------------------------------------------------------
** libs
using C++ compiler: ‘clang version 19.1.5’
using C++14
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/unigd/src'
rm -f unigd.so base_64.o compress.o cpp11.o draw_data.o page_store.o plot_history.o r_thread_posix.o r_thread_win32.o renderer_cairo.o renderer_json.o renderer_meta.o renderer_strings.o renderer_svg.o renderer_tikz.o renderers.o unigd.o unigd_dev.o unigd_external.o uuid.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c base_64.cpp -o base_64.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c compress.cpp -o compress.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c cpp11.cpp -o cpp11.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c draw_data.cpp -o draw_data.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c page_store.cpp -o page_store.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c plot_history.cpp -o plot_history.o
plot_history.cpp:7:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
7 | #define R_NO_REMAP
| ^
<command line>:4:9: note: previous definition is here
4 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c r_thread_posix.cpp -o r_thread_posix.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c r_thread_win32.cpp -o r_thread_win32.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c renderer_cairo.cpp -o renderer_cairo.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c renderer_json.cpp -o renderer_json.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c renderer_meta.cpp -o renderer_meta.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c renderer_strings.cpp -o renderer_strings.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c renderer_svg.cpp -o renderer_svg.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c renderer_tikz.cpp -o renderer_tikz.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c renderers.cpp -o renderers.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c unigd.cpp -o unigd.o
In file included from unigd.cpp:15:
./generic_dev.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:4:9: note: previous definition is here
4 | #define R_NO_REMAP 1
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c unigd_dev.cpp -o unigd_dev.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c unigd_external.cpp -o unigd_external.o
In file included from unigd_dev.cpp:2:
In file included from ./unigd_dev.h:10:
./generic_dev.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:4:9: note: previous definition is here
4 | #define R_NO_REMAP 1
| ^
In file included from unigd_external.cpp:5:
In file included from ./unigd_dev.h:10:
./generic_dev.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
4 | #define R_NO_REMAP
| ^
<command line>:4:9: note: previous definition is here
4 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c uuid.cpp -o uuid.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++14 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o unigd.so base_64.o compress.o cpp11.o draw_data.o page_store.o plot_history.o r_thread_posix.o r_thread_win32.o renderer_cairo.o renderer_json.o renderer_meta.o renderer_strings.o renderer_svg.o renderer_tikz.o renderers.o unigd.o unigd_dev.o unigd_external.o uuid.o -lcairo -lfreetype -lpng -lz
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/unigd/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/unigd/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/unigd/src'
installing to /data/gannet/ripley/R/packages/tests-clang/unigd.Rcheck/00LOCK-unigd/00new/unigd/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (unigd)