* installing *source* package ‘triptych’ ...
** package ‘triptych’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.5’
using C++20
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/triptych/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c cpp11.cpp -o cpp11.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c md.cpp -o md.o
In file included from md.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/as.hpp:5:
In file included from /usr/local/clang19/bin/../include/c++/v1/memory:940:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/allocator.h:15:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/allocate_at_least.h:13:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/allocator_traits.h:14:
/usr/local/clang19/bin/../include/c++/v1/__memory/construct_at.h:67:3: warning: destructor called on non-final 'contribution_median' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
67 | __loc->~_Tp();
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/allocator_traits.h:339:10: note: in instantiation of function template specialization 'std::__destroy_at<contribution_median, 0>' requested here
339 | std::__destroy_at(__p);
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:985:23: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<contribution_median>>::destroy<contribution_median, void, 0>' requested here
985 | __alloc_traits::destroy(__alloc(), std::__to_address(--__soon_to_be_end));
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:979:5: note: in instantiation of member function 'std::vector<contribution_median>::__base_destruct_at_end' requested here
979 | __base_destruct_at_end(this->__begin_);
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:530:16: note: in instantiation of member function 'std::vector<contribution_median>::__clear' requested here
530 | __vec_.__clear();
| ^
/usr/local/clang19/bin/../include/c++/v1/__utility/exception_guard.h:86:7: note: in instantiation of member function 'std::vector<contribution_median>::__destroy_vector::operator()' requested here
86 | __rollback_();
| ^
/usr/local/clang19/bin/../include/c++/v1/__utility/exception_guard.h:137:10: note: in instantiation of member function 'std::__exception_guard_exceptions<std::vector<contribution_median>::__destroy_vector>::~__exception_guard_exceptions' requested here
137 | return __exception_guard<_Rollback>(std::move(__rollback));
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:1284:23: note: in instantiation of function template specialization 'std::__make_exception_guard<std::vector<contribution_median>::__destroy_vector>' requested here
1284 | auto __guard = std::__make_exception_guard(__destroy_vector(*this));
| ^
./mdiag.h:255:44: note: in instantiation of member function 'std::vector<contribution_median>::vector' requested here
255 | std::vector<contribution_median> contribs{ {0.0, { 0 }} };
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/construct_at.h:67:11: note: qualify call to silence this warning
67 | __loc->~_Tp();
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/construct_at.h:67:3: warning: destructor called on non-final 'contribution_quant' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
67 | __loc->~_Tp();
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/allocator_traits.h:339:10: note: in instantiation of function template specialization 'std::__destroy_at<contribution_quant, 0>' requested here
339 | std::__destroy_at(__p);
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:985:23: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<contribution_quant>>::destroy<contribution_quant, void, 0>' requested here
985 | __alloc_traits::destroy(__alloc(), std::__to_address(--__soon_to_be_end));
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:979:5: note: in instantiation of member function 'std::vector<contribution_quant>::__base_destruct_at_end' requested here
979 | __base_destruct_at_end(this->__begin_);
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:530:16: note: in instantiation of member function 'std::vector<contribution_quant>::__clear' requested here
530 | __vec_.__clear();
| ^
/usr/local/clang19/bin/../include/c++/v1/__utility/exception_guard.h:86:7: note: in instantiation of member function 'std::vector<contribution_quant>::__destroy_vector::operator()' requested here
86 | __rollback_();
| ^
/usr/local/clang19/bin/../include/c++/v1/__utility/exception_guard.h:137:10: note: in instantiation of member function 'std::__exception_guard_exceptions<std::vector<contribution_quant>::__destroy_vector>::~__exception_guard_exceptions' requested here
137 | return __exception_guard<_Rollback>(std::move(__rollback));
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:1284:23: note: in instantiation of function template specialization 'std::__make_exception_guard<std::vector<contribution_quant>::__destroy_vector>' requested here
1284 | auto __guard = std::__make_exception_guard(__destroy_vector(*this));
| ^
./mdiag.h:356:43: note: in instantiation of member function 'std::vector<contribution_quant>::vector' requested here
356 | std::vector<contribution_quant> contribs{ {0.0, {0, 0}} };
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/construct_at.h:67:11: note: qualify call to silence this warning
67 | __loc->~_Tp();
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/construct_at.h:67:3: warning: destructor called on non-final 'contribution_prob' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
67 | __loc->~_Tp();
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/allocator_traits.h:339:10: note: in instantiation of function template specialization 'std::__destroy_at<contribution_prob, 0>' requested here
339 | std::__destroy_at(__p);
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:985:23: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<contribution_prob>>::destroy<contribution_prob, void, 0>' requested here
985 | __alloc_traits::destroy(__alloc(), std::__to_address(--__soon_to_be_end));
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:979:5: note: in instantiation of member function 'std::vector<contribution_prob>::__base_destruct_at_end' requested here
979 | __base_destruct_at_end(this->__begin_);
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:530:16: note: in instantiation of member function 'std::vector<contribution_prob>::__clear' requested here
530 | __vec_.__clear();
| ^
/usr/local/clang19/bin/../include/c++/v1/__utility/exception_guard.h:86:7: note: in instantiation of member function 'std::vector<contribution_prob>::__destroy_vector::operator()' requested here
86 | __rollback_();
| ^
/usr/local/clang19/bin/../include/c++/v1/__utility/exception_guard.h:137:10: note: in instantiation of member function 'std::__exception_guard_exceptions<std::vector<contribution_prob>::__destroy_vector>::~__exception_guard_exceptions' requested here
137 | return __exception_guard<_Rollback>(std::move(__rollback));
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:1284:23: note: in instantiation of function template specialization 'std::__make_exception_guard<std::vector<contribution_prob>::__destroy_vector>' requested here
1284 | auto __guard = std::__make_exception_guard(__destroy_vector(*this));
| ^
./mdiag.h:454:42: note: in instantiation of member function 'std::vector<contribution_prob>::vector' requested here
454 | std::vector<contribution_prob> contribs{ { 0.0, coef_int<2>{ 0, 0 } } };
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/construct_at.h:67:11: note: qualify call to silence this warning
67 | __loc->~_Tp();
| ^
In file included from md.cpp:2:
./mdiag.h:468:25: warning: suggest braces around initialization of subobject [-Wmissing-braces]
468 | coef_dbl<1> dbl_coef{ 0.0 };
| ^~~
| { }
./mdiag.h:478:30: warning: suggest braces around initialization of subobject [-Wmissing-braces]
478 | dbl_coef += coef_dbl<1>{ (rhs.knot - knot) * static_cast<double>(int_coef[0]) };
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| { }
./mdiag.h:485:30: warning: suggest braces around initialization of subobject [-Wmissing-braces]
485 | dbl_coef += coef_dbl<1>{ (rhs.knot - knot) * static_cast<double>(int_coef[0]) };
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| { }
./mdiag.h:572:81: warning: suggest braces around initialization of subobject [-Wmissing-braces]
572 | std::vector<contribution_mean> contribs{ {0.0, coef_int<1>{ 0 }, coef_dbl<1>{ 0.0 }} };
| ^~~
| { }
In file included from md.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/as.hpp:5:
In file included from /usr/local/clang19/bin/../include/c++/v1/memory:940:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/allocator.h:15:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/allocate_at_least.h:13:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/allocator_traits.h:14:
/usr/local/clang19/bin/../include/c++/v1/__memory/construct_at.h:67:3: warning: destructor called on non-final 'contribution_mean' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
67 | __loc->~_Tp();
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/allocator_traits.h:339:10: note: in instantiation of function template specialization 'std::__destroy_at<contribution_mean, 0>' requested here
339 | std::__destroy_at(__p);
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:985:23: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<contribution_mean>>::destroy<contribution_mean, void, 0>' requested here
985 | __alloc_traits::destroy(__alloc(), std::__to_address(--__soon_to_be_end));
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:979:5: note: in instantiation of member function 'std::vector<contribution_mean>::__base_destruct_at_end' requested here
979 | __base_destruct_at_end(this->__begin_);
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:530:16: note: in instantiation of member function 'std::vector<contribution_mean>::__clear' requested here
530 | __vec_.__clear();
| ^
/usr/local/clang19/bin/../include/c++/v1/__utility/exception_guard.h:86:7: note: in instantiation of member function 'std::vector<contribution_mean>::__destroy_vector::operator()' requested here
86 | __rollback_();
| ^
/usr/local/clang19/bin/../include/c++/v1/__utility/exception_guard.h:137:10: note: in instantiation of member function 'std::__exception_guard_exceptions<std::vector<contribution_mean>::__destroy_vector>::~__exception_guard_exceptions' requested here
137 | return __exception_guard<_Rollback>(std::move(__rollback));
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:1284:23: note: in instantiation of function template specialization 'std::__make_exception_guard<std::vector<contribution_mean>::__destroy_vector>' requested here
1284 | auto __guard = std::__make_exception_guard(__destroy_vector(*this));
| ^
./mdiag.h:572:42: note: in instantiation of member function 'std::vector<contribution_mean>::vector' requested here
572 | std::vector<contribution_mean> contribs{ {0.0, coef_int<1>{ 0 }, coef_dbl<1>{ 0.0 }} };
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/construct_at.h:67:11: note: qualify call to silence this warning
67 | __loc->~_Tp();
| ^
In file included from md.cpp:2:
./mdiag.h:573:67: warning: suggest braces around initialization of subobject [-Wmissing-braces]
573 | contribution_mean baseline{ 0.0, coef_int<1>{ 0 }, coef_dbl<1>{ 0.0 } };
| ^~~
| { }
./mdiag.h:525:39: warning: suggest braces around initialization of subobject [-Wmissing-braces]
525 | constexpr coef_dbl<1> coef_y_a{ 0.0 };
| ^~~
| { }
./mdiag.h:527:62: warning: suggest braces around initialization of subobject [-Wmissing-braces]
527 | contribs.emplace_back(x[i], coef_neg_b, coef_dbl<1>{ y[i] - x[i] });
| ^~~~~~~~~~~
| { }
./mdiag.h:548:62: warning: suggest braces around initialization of subobject [-Wmissing-braces]
548 | contribs.emplace_back(x[i], coef_neg_b, coef_dbl<1>{ y[i] - x[i] });
| ^~~~~~~~~~~
| { }
./mdiag.h:549:64: warning: suggest braces around initialization of subobject [-Wmissing-braces]
549 | contribs.emplace_back(ref[i], coef_pos_b, coef_dbl<1>{ ref[i] - y[i] });
| ^~~~~~~~~~~~~
| { }
./mdiag.h:588:25: warning: suggest braces around initialization of subobject [-Wmissing-braces]
588 | coef_dbl<2> dbl_coef{ 0.0, 0.0 };
| ^~~~~~~~
| { }
./mdiag.h:598:30: warning: suggest braces around initialization of subobject [-Wmissing-braces]
598 | dbl_coef += coef_dbl<2>{ (rhs.knot - knot)* static_cast<double>(int_coef[0]), (rhs.knot - knot)* static_cast<double>(int_coef[1]) };
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| { }
./mdiag.h:605:30: warning: suggest braces around initialization of subobject [-Wmissing-braces]
605 | dbl_coef += coef_dbl<2>{ (rhs.knot - knot) * static_cast<double>(int_coef[0]), (rhs.knot - knot) * static_cast<double>(int_coef[1]) };
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| { }
./mdiag.h:716:86: warning: suggest braces around initialization of subobject [-Wmissing-braces]
716 | std::vector<contribution_expect> contribs{ {0.0, coef_int<2>{ 0, 0 }, coef_dbl<2>{ 0.0, 0.0 }} };
| ^~~~~~~~
| { }
In file included from md.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/as.hpp:5:
In file included from /usr/local/clang19/bin/../include/c++/v1/memory:940:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/allocator.h:15:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/allocate_at_least.h:13:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/allocator_traits.h:14:
/usr/local/clang19/bin/../include/c++/v1/__memory/construct_at.h:67:3: warning: destructor called on non-final 'contribution_expect' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
67 | __loc->~_Tp();
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/allocator_traits.h:339:10: note: in instantiation of function template specialization 'std::__destroy_at<contribution_expect, 0>' requested here
339 | std::__destroy_at(__p);
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:985:23: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<contribution_expect>>::destroy<contribution_expect, void, 0>' requested here
985 | __alloc_traits::destroy(__alloc(), std::__to_address(--__soon_to_be_end));
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:979:5: note: in instantiation of member function 'std::vector<contribution_expect>::__base_destruct_at_end' requested here
979 | __base_destruct_at_end(this->__begin_);
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:530:16: note: in instantiation of member function 'std::vector<contribution_expect>::__clear' requested here
530 | __vec_.__clear();
| ^
/usr/local/clang19/bin/../include/c++/v1/__utility/exception_guard.h:86:7: note: in instantiation of member function 'std::vector<contribution_expect>::__destroy_vector::operator()' requested here
86 | __rollback_();
| ^
/usr/local/clang19/bin/../include/c++/v1/__utility/exception_guard.h:137:10: note: in instantiation of member function 'std::__exception_guard_exceptions<std::vector<contribution_expect>::__destroy_vector>::~__exception_guard_exceptions' requested here
137 | return __exception_guard<_Rollback>(std::move(__rollback));
| ^
/usr/local/clang19/bin/../include/c++/v1/vector:1284:23: note: in instantiation of function template specialization 'std::__make_exception_guard<std::vector<contribution_expect>::__destroy_vector>' requested here
1284 | auto __guard = std::__make_exception_guard(__destroy_vector(*this));
| ^
./mdiag.h:716:44: note: in instantiation of member function 'std::vector<contribution_expect>::vector' requested here
716 | std::vector<contribution_expect> contribs{ {0.0, coef_int<2>{ 0, 0 }, coef_dbl<2>{ 0.0, 0.0 }} };
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/construct_at.h:67:11: note: qualify call to silence this warning
67 | __loc->~_Tp();
| ^
In file included from md.cpp:2:
./mdiag.h:717:72: warning: suggest braces around initialization of subobject [-Wmissing-braces]
717 | contribution_expect baseline{ 0.0, coef_int<2>{ 0, 0 }, coef_dbl<2>{ 0.0, 0.0 } };
| ^~~~~~~~
| { }
./mdiag.h:648:40: warning: suggest braces around initialization of subobject [-Wmissing-braces]
648 | constexpr coef_dbl<2> coef_y_ab{ 0.0, 0.0 };
| ^~~~~~~~
| { }
./mdiag.h:653:55: warning: suggest braces around initialization of subobject [-Wmissing-braces]
653 | const auto coef_x_ab = x_lt_y ? coef_dbl<2>({ 0.0, y[i] - x[i] }) : coef_dbl<2>({ y[i] - x[i], 0.0 });
| ^~~~~~~~~~~~~~~~
| { }
./mdiag.h:653:91: warning: suggest braces around initialization of subobject [-Wmissing-braces]
653 | const auto coef_x_ab = x_lt_y ? coef_dbl<2>({ 0.0, y[i] - x[i] }) : coef_dbl<2>({ y[i] - x[i], 0.0 });
| ^~~~~~~~~~~~~~~~
| { }
./mdiag.h:680:40: warning: suggest braces around initialization of subobject [-Wmissing-braces]
680 | constexpr coef_dbl<2> coef_y_ab{ 0.0, 0.0 };
| ^~~~~~~~
| { }
./mdiag.h:686:55: warning: suggest braces around initialization of subobject [-Wmissing-braces]
686 | const auto coef_x_ab = x_lt_y ? coef_dbl<2>({ 0.0, y[i] - x[i] }) : coef_dbl<2>({ y[i] - x[i], 0.0 });
| ^~~~~~~~~~~~~~~~~
| { }
./mdiag.h:686:92: warning: suggest braces around initialization of subobject [-Wmissing-braces]
686 | const auto coef_x_ab = x_lt_y ? coef_dbl<2>({ 0.0, y[i] - x[i] }) : coef_dbl<2>({ y[i] - x[i], 0.0 });
| ^~~~~~~~~~~~~~~~
| { }
./mdiag.h:687:59: warning: suggest braces around initialization of subobject [-Wmissing-braces]
687 | const auto coef_ref_ab = ref_lt_y ? coef_dbl<2>({ 0.0, ref[i] - y[i] }) : coef_dbl<2>({ ref[i] - y[i], 0.0 });
| ^~~~~~~~~~~~~~~~~~
| { }
./mdiag.h:687:97: warning: suggest braces around initialization of subobject [-Wmissing-braces]
687 | const auto coef_ref_ab = ref_lt_y ? coef_dbl<2>({ 0.0, ref[i] - y[i] }) : coef_dbl<2>({ ref[i] - y[i], 0.0 });
| ^~~~~~~~~~~~~~~~~~
| { }
27 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o triptych.so cpp11.o md.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/triptych/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/triptych/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/triptych/src'
installing to /data/gannet/ripley/R/packages/tests-clang/triptych.Rcheck/00LOCK-triptych/00new/triptych/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (triptych)