• using R Under development (unstable) (2025-02-19 r87749)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 20.1.0-rc2     flang version 20.1.0-rc2
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘tidystats/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘tidystats’ version ‘0.6.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘tidystats’ can be installed ... [8s/11s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... NOTE   Missing dependency on R >= 4.1.0 because package code uses the pipe   |> or function shorthand \(...) syntax added in R 4.1.0.   File(s) using such syntax:     ‘describe_data.r’ ‘helper_functions.r’ ‘tidy_stats.R’     ‘tidy_stats.afex.r’ ‘tidy_stats.brmsfit.r’ ‘tidy_stats.emmeans.R’     ‘tidy_stats.irr.r’ ‘tidy_stats.lavaan.r’ ‘tidy_stats.lmerMod.r’     ‘tidy_stats.nlme.r’ ‘tidy_stats.psych.r’ ‘tidy_stats.tidystats.r’
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [19s/26s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... INFO Undeclared package ‘datawizard’ in Rd xrefs
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [39s/54s] ERROR   Running ‘testthat.R’ [39s/53s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(tidystats)   This version of tidystats uses a new and improved way of structuring statistics. This breaks previous (major) versions of tidystats.   >   > test_check("tidystats")   [ FAIL 13 | WARN 50 | SKIP 0 | PASS 171 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test_afex.R:226:3'): mixed simple model with random-slopes works ──   `tidy_model` not equal to `expected_tidy_model`.   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 2: Component 4: Mean relative difference: 0.5109151   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 3: Component 3: Mean relative difference: 0.4755183   Backtrace:       ▆    1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$mixed) at test_afex.R:226:3    2. └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)   ── Failure ('test_afex.R:240:3'): mixed with expanded random effects terms works ──   `tidy_model` not equal to `expected_tidy_model`.   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 2: Component 4: Mean relative difference: 0.5022773   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 3: Component 3: Mean relative difference: 0.1632772   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 4: Component 2: Mean absolute difference: 0.00112978   Backtrace:       ▆    1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$mixed_expand_RE) at test_afex.R:240:3    2. └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)   ── Failure ('test_afex.R:254:3'): mixed with random intercept plus random slope works ──   `tidy_model` not equal to `expected_tidy_model`.   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 2: Component 4: Mean relative difference: 0.1374001   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 3: Component 3: Mean relative difference: 15.90515   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 4: Component 2: Mean relative difference: 0.8018262   Backtrace:       ▆    1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$mixed_random_interecept) at test_afex.R:254:3    2. └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)   ── Failure ('test_afex.R:268:3'): mixed with treatment contrasts checked works ──   `tidy_model` not equal to `expected_tidy_model`.   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 2: Component 4: Mean relative difference: 54.71549   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 3: Component 3: Mean relative difference: 2.03698   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 4: Component 2: Mean relative difference: 0.9587316   Backtrace:       ▆    1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$mixed_contrast) at test_afex.R:268:3    2. └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)   ── Failure ('test_lme4.R:10:3'): lme4 works ────────────────────────────────────   `tidy_model` not equal to `expected_tidy_model`.   Length mismatch: comparison on first 5 components   Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 1: Component 3: Mean relative difference: 0.3035495   Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 2: Component 3: Mean relative difference: 0.6992413   Component "groups": Component 2: Component 2: Component 2: Component 2: Component 1: Component 3: Mean relative difference: 0.03292514   Component "groups": Component 2: Component 2: Component 2: Component 2: Component 2: Component 3: Mean relative difference: 0.06476622   Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 2: Component 2: Mean relative difference: 0.2110933   Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 3: Component 3: Mean relative difference: 0.1742998   Component "groups": Component 3: Component 2: Component 1: Component 2: Component 2: Component 2: Component 2: Component 2: Mean relative difference: 0.03292566   Component "groups": Component 3: Component 2: Component 1: Component 2: Component 2: Component 2: Component 3: Component 3: Mean relative difference: 0.03404613   ...   Backtrace:       ▆    1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$lme4) at test_lme4.R:10:3    2. └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)   ── Failure ('test_lme4.R:21:3'): lme4 ML works ─────────────────────────────────   `tidy_model` not equal to `expected_tidy_model`.   Length mismatch: comparison on first 4 components   Component "groups": Component 1: Component 2: Component 1: Component 2: Mean absolute difference: Inf   Component "groups": Component 1: Component 2: Component 2: Component 2: Mean absolute difference: Inf   Component "groups": Component 1: Component 2: Component 3: Component 3: Mean absolute difference: Inf   Component "groups": Component 1: Component 2: Component 4: Component 3: Mean absolute difference: Inf   Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 1: Component 3: Mean relative difference: 0.2715963   Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 2: Component 3: Mean relative difference: 0.6169572   Component "groups": Component 2: Component 2: Component 2: Component 2: Component 1: Component 3: Mean relative difference: 0.03051347   Component "groups": Component 2: Component 2: Component 2: Component 2: Component 2: Component 3: Mean relative difference: 0.06009589   ...   Backtrace:       ▆    1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$lme4_ML) at test_lme4.R:21:3    2. └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)   ── Failure ('test_lme4.R:30:3'): lme4 slopes works ─────────────────────────────   `tidy_model` not equal to `expected_tidy_model`.   Length mismatch: comparison on first 5 components   Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 1: Component 3: Mean relative difference: 0.02843459   Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 2: Component 3: Mean relative difference: 0.05767774   Component "groups": Component 2: Component 2: Component 2: Component 2: Component 1: Component 3: Mean relative difference: 0.04953387   Component "groups": Component 2: Component 2: Component 2: Component 2: Component 2: Component 3: Mean relative difference: 0.1015214   Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 2: Component 2: Mean relative difference: 0.0338931   Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 3: Component 3: Mean relative difference: 0.03278199   Component "groups": Component 3: Component 2: Component 1: Component 2: Component 2: Component 2: Component 2: Component 2: Mean relative difference: 0.7299958   Component "groups": Component 3: Component 2: Component 1: Component 2: Component 2: Component 2: Component 3: Component 3: Mean relative difference: 2.703646   ...   Backtrace:       ▆    1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$lme4_slopes) at test_lme4.R:30:3    2. └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)   ── Failure ('test_lme4.R:42:3'): lme4 anova works ──────────────────────────────   `tidy_model` not equal to `expected_tidy_model`.   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 4: Component 3: Mean relative difference: 0.06925136   Backtrace:       ▆    1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$anova_lme4) at test_lme4.R:42:3    2. └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)   ── Failure ('test_lmerTest.R:12:3'): lmerTest 1 works ──────────────────────────   `tidy_model` not equal to `expected_tidy_model`.   Length mismatch: comparison on first 5 components   Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 1: Component 3: Mean relative difference: 0.01568063   Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 2: Component 3: Mean relative difference: 0.03160713   Component "groups": Component 2: Component 2: Component 1: Component 3: Component 2: Component 2: Component 1: Component 2: Component 1: Component 3: Mean absolute difference: 0.065551   Component "groups": Component 2: Component 2: Component 2: Component 2: Component 1: Component 3: Mean relative difference: 0.05062248   Component "groups": Component 2: Component 2: Component 2: Component 2: Component 2: Component 3: Mean relative difference: 0.1038076   Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 2: Component 2: Mean relative difference: 0.02476591   Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 3: Component 2: Mean relative difference: 0.06337346   Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 4: Component 3: Mean relative difference: 0.02416733   ...   Backtrace:       ▆    1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$lmerTest1) at test_lmerTest.R:12:3    2. └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)   ── Failure ('test_lmerTest.R:25:3'): lmerTest 2 works ──────────────────────────   `tidy_model` not equal to `expected_tidy_model`.   Length mismatch: comparison on first 5 components   Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 1: Component 3: Mean relative difference: 0.2704512   Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 2: Component 3: Mean relative difference: 0.6140457   Component "groups": Component 2: Component 2: Component 2: Component 3: Component 1: Component 2: Component 1: Component 2: Component 1: Component 3: Mean relative difference: 0.5621248   Component "groups": Component 2: Component 2: Component 2: Component 3: Component 1: Component 2: Component 1: Component 2: Component 2: Component 3: Mean relative difference: 0.8082655   Component "groups": Component 2: Component 2: Component 3: Component 2: Component 1: Component 3: Mean relative difference: 0.07744851   Component "groups": Component 2: Component 2: Component 3: Component 2: Component 2: Component 3: Mean relative difference: 0.1488984   Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 2: Component 2: Mean relative difference: 0.1227027   Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 3: Component 2: Mean relative difference: 3.735043   ...   Backtrace:       ▆    1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$lmerTest2) at test_lmerTest.R:25:3    2. └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)   ── Failure ('test_lmerTest.R:37:3'): lmerTest ML works ─────────────────────────   `tidy_model` not equal to `expected_tidy_model`.   Length mismatch: comparison on first 4 components   Component "groups": Component 1: Component 2: Component 1: Component 2: Mean absolute difference: Inf   Component "groups": Component 1: Component 2: Component 2: Component 2: Mean absolute difference: Inf   Component "groups": Component 1: Component 2: Component 3: Component 3: Mean absolute difference: Inf   Component "groups": Component 1: Component 2: Component 4: Component 3: Mean absolute difference: Inf   Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 1: Component 3: Mean relative difference: 0.01829808   Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 2: Component 3: Mean relative difference: 0.03626137   Component "groups": Component 2: Component 2: Component 1: Component 3: Component 2: Component 2: Component 1: Component 2: Component 1: Component 3: Mean absolute difference: 0.081321   Component "groups": Component 2: Component 2: Component 2: Component 2: Component 1: Component 3: Mean relative difference: 0.05651295   ...   Backtrace:       ▆    1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$lmerTest_ML) at test_lmerTest.R:37:3    2. └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)   ── Failure ('test_lmerTest.R:49:3'): lmerTest anova works ──────────────────────   `tidy_model` not equal to `expected_tidy_model`.   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 1: Component 2: Mean relative difference: 14.41206   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 2: Component 2: Mean relative difference: 14.41206   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 3: Component 3: Mean relative difference: 12.96264   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 5: Component 4: Mean relative difference: 0.8530509   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 6: Component 2: Mean relative difference: 0.999955   Backtrace:       ▆    1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$anova_lmerTest) at test_lmerTest.R:49:3    2. └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)   ── Failure ('test_lmerTest.R:59:3'): lmerTest anova lme4 works ─────────────────   `tidy_model` not equal to `expected_tidy_model`.   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 2: Component 2: Mean relative difference: 14.41206   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 3: Component 2: Mean relative difference: 14.41206   Component "groups": Component 1: Component 2: Component 1: Component 2: Component 4: Component 3: Mean relative difference: 12.96264   Backtrace:       ▆    1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$anova_lmerTest_lme4) at test_lmerTest.R:59:3    2. └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)      [ FAIL 13 | WARN 50 | SKIP 0 | PASS 171 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [13s/22s] OK
• checking PDF version of manual ... [7s/10s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE