* installing *source* package ‘thor’ ...
** package ‘thor’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/thor/src'
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -Ilmdb -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c lmdb/mdb.c -o lmdb/mdb.o
lmdb/mdb.c:935:11: warning: defining a type within '__builtin_offsetof' is a C23 extension [-Wc23-extensions]
935 | + 270 * (MDB_LOCK_TYPE % 120)
| ^~~~~~~~~~~~~
lmdb/mdb.c:913:12: note: expanded from macro 'MDB_LOCK_TYPE'
913 | LOG2_MOD(ALIGNOF2(pthread_mutex_t), 5) + \
| ^~~~~~~~~~~~~~~~~~~~~~~~~
lmdb/mdb.c:711:19: note: expanded from macro 'ALIGNOF2'
711 | LOW_BIT(offsetof(struct { char ch_; type align_; }, align_))
| ^~~~~~
/usr/local/clang19/lib/clang/19/include/__stddef_offsetof.h:16:43: note: expanded from macro 'offsetof'
16 | #define offsetof(t, d) __builtin_offsetof(t, d)
| ^
lmdb/mdb.c:701:23: note: expanded from macro 'LOW_BIT'
701 | #define LOW_BIT(n) ((n) & (-(n)))
| ^
lmdb/mdb.c:704:37: note: expanded from macro 'LOG2_MOD'
704 | #define LOG2_MOD(p2, n) (7 - 86 / ((p2) % ((1U<<(n))-1) + 11))
| ^~
lmdb/mdb.c:935:11: warning: defining a type within '__builtin_offsetof' is a C23 extension [-Wc23-extensions]
935 | + 270 * (MDB_LOCK_TYPE % 120)
| ^~~~~~~~~~~~~
lmdb/mdb.c:913:12: note: expanded from macro 'MDB_LOCK_TYPE'
913 | LOG2_MOD(ALIGNOF2(pthread_mutex_t), 5) + \
| ^~~~~~~~~~~~~~~~~~~~~~~~~
lmdb/mdb.c:711:19: note: expanded from macro 'ALIGNOF2'
711 | LOW_BIT(offsetof(struct { char ch_; type align_; }, align_))
| ^~~~~~
/usr/local/clang19/lib/clang/19/include/__stddef_offsetof.h:16:43: note: expanded from macro 'offsetof'
16 | #define offsetof(t, d) __builtin_offsetof(t, d)
| ^
lmdb/mdb.c:701:31: note: expanded from macro 'LOW_BIT'
701 | #define LOW_BIT(n) ((n) & (-(n)))
| ^
lmdb/mdb.c:704:37: note: expanded from macro 'LOG2_MOD'
704 | #define LOG2_MOD(p2, n) (7 - 86 / ((p2) % ((1U<<(n))-1) + 11))
| ^~
lmdb/mdb.c:2383:6: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
2383 | int rc, (*insert)(MDB_ID2L, MDB_ID2 *);
| ^
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -Ilmdb -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c lmdb/midl.c -o lmdb/midl.o
3 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -Ilmdb -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c registration.c -o registration.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -Ilmdb -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c thor.c -o thor.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -Ilmdb -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c util.c -o util.o
/usr/local/clang19/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o thor.so lmdb/mdb.o lmdb/midl.o registration.o thor.o util.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/thor/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/thor/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/thor/src'
installing to /data/gannet/ripley/R/packages/tests-clang/thor.Rcheck/00LOCK-thor/00new/thor/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (thor)