* installing *source* package ‘spNetwork’ ...
** package ‘spNetwork’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.8’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/spNetwork/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c base_kernel_funtions.cpp -o base_kernel_funtions.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c border_correction.cpp -o border_correction.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bw_selection_nkde.cpp -o bw_selection_nkde.o
bw_selection_nkde.cpp:37:7: warning: unused variable 'depth' [-Wunused-variable]
37 | int depth = 0;
| ^~~~~
bw_selection_nkde.cpp:145:7: warning: unused variable 'depth' [-Wunused-variable]
145 | int depth = 0;
| ^~~~~
bw_selection_nkde.cpp:267:7: warning: unused variable 'depth' [-Wunused-variable]
267 | int depth = 0;
| ^~~~~
3 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bw_selection_tnkde.cpp -o bw_selection_tnkde.o
bw_selection_tnkde.cpp:41:7: warning: unused variable 'depth' [-Wunused-variable]
41 | int depth = 0;
| ^~~~~
bw_selection_tnkde.cpp:172:8: warning: unused variable 'depth' [-Wunused-variable]
172 | int depth = 0;
| ^~~~~
bw_selection_tnkde.cpp:188:11: warning: unused variable 'bw_net' [-Wunused-variable]
188 | double bw_net, bw_time;
| ^~~~~~
bw_selection_tnkde.cpp:188:19: warning: unused variable 'bw_time' [-Wunused-variable]
188 | double bw_net, bw_time;
| ^~~~~~~
bw_selection_tnkde.cpp:325:7: warning: unused variable 'depth' [-Wunused-variable]
325 | int depth = 0;
| ^~~~~
bw_selection_tnkde.cpp:475:8: warning: unused variable 'depth' [-Wunused-variable]
475 | int depth = 0;
| ^~~~~
bw_selection_tnkde.cpp:489:11: warning: unused variable 'bw_net' [-Wunused-variable]
489 | double bw_net, bw_time;
| ^~~~~~
bw_selection_tnkde.cpp:489:19: warning: unused variable 'bw_time' [-Wunused-variable]
489 | double bw_net, bw_time;
| ^~~~~~~
bw_selection_tnkde.cpp:643:7: warning: unused variable 'depth' [-Wunused-variable]
643 | int depth = 0;
| ^~~~~
bw_selection_tnkde.cpp:846:8: warning: unused variable 'depth' [-Wunused-variable]
846 | int depth = 0;
| ^~~~~
bw_selection_tnkde.cpp:856:8: warning: unused variable 'n_bw_net' [-Wunused-variable]
856 | int n_bw_net = bws_net.n_rows;
| ^~~~~~~~
bw_selection_tnkde.cpp:857:8: warning: unused variable 'n_bw_time' [-Wunused-variable]
857 | int n_bw_time = bws_time.n_cols;
| ^~~~~~~~~
bw_selection_tnkde.cpp:866:19: warning: unused variable 'bw_time' [-Wunused-variable]
866 | double bw_net, bw_time;
| ^~~~~~~
bw_selection_tnkde.cpp:997:8: warning: unused variable 'n_net' [-Wunused-variable]
997 | int n_net = bws_net.n_rows;
| ^~~~~
14 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c geometrical_functions.cpp -o geometrical_functions.o
geometrical_functions.cpp:260:22: warning: unused variable 'x3' [-Wunused-variable]
260 | double x2,y2,x1,y1,x3,y3,dd;
| ^~
geometrical_functions.cpp:260:25: warning: unused variable 'y3' [-Wunused-variable]
260 | double x2,y2,x1,y1,x3,y3,dd;
| ^~
geometrical_functions.cpp:324:13: warning: unused variable 'dd' [-Wunused-variable]
324 | double d, dd, totald, dt, t;
| ^~
geometrical_functions.cpp:324:17: warning: unused variable 'totald' [-Wunused-variable]
324 | double d, dd, totald, dt, t;
| ^~~~~~
geometrical_functions.cpp:324:25: warning: unused variable 'dt' [-Wunused-variable]
324 | double d, dd, totald, dt, t;
| ^~
geometrical_functions.cpp:324:29: warning: unused variable 't' [-Wunused-variable]
324 | double d, dd, totald, dt, t;
| ^
geometrical_functions.cpp:326:7: warning: unused variable 'j' [-Wunused-variable]
326 | int j;
| ^
geometrical_functions.cpp:327:10: warning: unused variable 'x2' [-Wunused-variable]
327 | double x2,y2,x1,y1,x3,y3;
| ^~
geometrical_functions.cpp:327:13: warning: unused variable 'y2' [-Wunused-variable]
327 | double x2,y2,x1,y1,x3,y3;
| ^~
geometrical_functions.cpp:327:16: warning: unused variable 'x1' [-Wunused-variable]
327 | double x2,y2,x1,y1,x3,y3;
| ^~
geometrical_functions.cpp:327:19: warning: unused variable 'y1' [-Wunused-variable]
327 | double x2,y2,x1,y1,x3,y3;
| ^~
geometrical_functions.cpp:327:22: warning: unused variable 'x3' [-Wunused-variable]
327 | double x2,y2,x1,y1,x3,y3;
| ^~
geometrical_functions.cpp:327:25: warning: unused variable 'y3' [-Wunused-variable]
327 | double x2,y2,x1,y1,x3,y3;
| ^~
geometrical_functions.cpp:440:31: warning: unused variable 'diff' [-Wunused-variable]
440 | float start_dist, end_dist, diff, line_length;
| ^~~~
geometrical_functions.cpp:440:37: warning: unused variable 'line_length' [-Wunused-variable]
440 | float start_dist, end_dist, diff, line_length;
| ^~~~~~~~~~~
geometrical_functions.cpp:973:9: warning: unused variable 'j' [-Wunused-variable]
973 | int i,j;
| ^
geometrical_functions.cpp:1040:9: warning: unused variable 'j' [-Wunused-variable]
1040 | int i,j;
| ^
17 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c k_and_g_func.cpp -o k_and_g_func.o
k_and_g_func.cpp:295:13: warning: unused variable 'dtime' [-Wunused-variable]
295 | float dtime = breaks_time[j];
| ^~~~~
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c matrices_functions.cpp -o matrices_functions.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c nkde_continuous.cpp -o nkde_continuous.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c nkde_discontinuous.cpp -o nkde_discontinuous.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c spatial_indexing.cpp -o spatial_indexing.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c spatial_indexing_export.cpp -o spatial_indexing_export.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o spNetwork.so RcppExports.o base_kernel_funtions.o border_correction.o bw_selection_nkde.o bw_selection_tnkde.o geometrical_functions.o k_and_g_func.o matrices_functions.o nkde_continuous.o nkde_discontinuous.o spatial_indexing.o spatial_indexing_export.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/spNetwork/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/spNetwork/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/spNetwork/src'
installing to /data/gannet/ripley/R/packages/tests-clang/spNetwork.Rcheck/00LOCK-spNetwork/00new/spNetwork/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spNetwork)