• using R Under development (unstable) (2025-03-12 r87947)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 20.1.0     flang version 20.1.0
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘smooth/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘smooth’ version ‘4.1.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘smooth’ can be installed ... [303s/398s] OK See the install log for details.
• used C compiler: ‘clang version 20.1.0’
• used C++ compiler: ‘clang version 20.1.0’
• checking installed package size ... INFO   installed size is 6.1Mb   sub-directories of 1Mb or more:     R 1.2Mb     doc 3.4Mb
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [159s/171s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [22s/22s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [17s/17s] OK   Running ‘testthat.R’ [17s/17s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [155s/156s] ERROR Error(s) in re-building vignettes: --- re-building ‘adam.Rmd’ using rmarkdown ** Processing: Figs/ETSMMM-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29388 bytes Input file size = 29502 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23879   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23879 Output IDAT size = 23879 bytes (5509 bytes decrease) Output file size = 23957 bytes (5545 bytes = 18.80% decrease) ** Processing: Figs/ETSMMMForecast-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32213 bytes Input file size = 32327 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26097   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26097 Output IDAT size = 26097 bytes (6116 bytes decrease) Output file size = 26175 bytes (6152 bytes = 19.03% decrease) ** Processing: Figs/ETSMMMPlots-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51188 bytes Input file size = 51338 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37314   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37314 Output IDAT size = 37314 bytes (13874 bytes decrease) Output file size = 37392 bytes (13946 bytes = 27.17% decrease) ** Processing: Figs/ETSMMMPlots-2.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 18483 bytes Input file size = 19365 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17234   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17234 Output IDAT size = 17234 bytes (1249 bytes decrease) Output file size = 17312 bytes (2053 bytes = 10.60% decrease) ** Processing: Figs/ETSLoss-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19149 bytes Input file size = 19251 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15174   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15174 Output IDAT size = 15174 bytes (3975 bytes decrease) Output file size = 15252 bytes (3999 bytes = 20.77% decrease) ** Processing: Figs/ETSDGNorm-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19174 bytes Input file size = 19276 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15269   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15269 Output IDAT size = 15269 bytes (3905 bytes decrease) Output file size = 15347 bytes (3929 bytes = 20.38% decrease) ** Processing: Figs/ETSSelection-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24541 bytes Input file size = 24643 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20884   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20884 Output IDAT size = 20884 bytes (3657 bytes decrease) Output file size = 20962 bytes (3681 bytes = 14.94% decrease) ** Processing: Figs/ETSCombination-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33658 bytes Input file size = 33784 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27312   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27312 Output IDAT size = 27312 bytes (6346 bytes decrease) Output file size = 27390 bytes (6394 bytes = 18.93% decrease) ** Processing: Figs/ETSMultiFreq-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 88167 bytes Input file size = 88365 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 84549   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 84549 Output IDAT size = 84549 bytes (3618 bytes decrease) Output file size = 84627 bytes (3738 bytes = 4.23% decrease) ** Processing: Figs/ETSMultiFreq10000-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 88167 bytes Input file size = 88365 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 84549   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 84549 Output IDAT size = 84549 bytes (3618 bytes decrease) Output file size = 84627 bytes (3738 bytes = 4.23% decrease) ** Processing: Figs/ETSMultiFreqBReused-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 88167 bytes Input file size = 88365 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 84549   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 84549 Output IDAT size = 84549 bytes (3618 bytes decrease) Output file size = 84627 bytes (3738 bytes = 4.23% decrease) Quitting from lines 220-223 [ETSMultiFreqOccurrence] (adam.Rmd) Error: processing vignette 'adam.Rmd' failed with diagnostics: REAL() can only be applied to a 'numeric', not a 'logical' --- failed re-building ‘adam.Rmd’ --- re-building ‘ces.Rmd’ using rmarkdown ** Processing: Figs/ces_N2457-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25200 bytes Input file size = 25314 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19765   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19765 Output IDAT size = 19765 bytes (5435 bytes decrease) Output file size = 19843 bytes (5471 bytes = 21.61% decrease) ** Processing: Figs/auto_ces_N2457-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27499 bytes Input file size = 27613 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21023   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21023 Output IDAT size = 21023 bytes (6476 bytes decrease) Output file size = 21101 bytes (6512 bytes = 23.58% decrease) --- finished re-building ‘ces.Rmd’ --- re-building ‘es.Rmd’ using rmarkdown ** Processing: Figs/es_N2457-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19598 bytes Input file size = 19700 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15553   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15553 Output IDAT size = 15553 bytes (4045 bytes decrease) Output file size = 15631 bytes (4069 bytes = 20.65% decrease) ** Processing: Figs/es_N2457_with_interval-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23927 bytes Input file size = 24029 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18588   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18588 Output IDAT size = 18588 bytes (5339 bytes decrease) Output file size = 18666 bytes (5363 bytes = 22.32% decrease) --- finished re-building ‘es.Rmd’ --- re-building ‘gum.Rmd’ using rmarkdown ** Processing: Figs/Autogum_N2457_1[1]-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36244 bytes Input file size = 36370 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29699   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29699 Output IDAT size = 29699 bytes (6545 bytes decrease) Output file size = 29777 bytes (6593 bytes = 18.13% decrease) --- finished re-building ‘gum.Rmd’ --- re-building ‘oes.Rmd’ using rmarkdown ** Processing: Figs/iETSFExample1-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19298 bytes Input file size = 19400 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17136   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17136 Output IDAT size = 17136 bytes (2162 bytes decrease) Output file size = 17214 bytes (2186 bytes = 11.27% decrease) ** Processing: Figs/iETSFExample2-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25194 bytes Input file size = 25308 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 22626   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 22626 Output IDAT size = 22626 bytes (2568 bytes decrease) Output file size = 22704 bytes (2604 bytes = 10.29% decrease) ** Processing: Figs/iETSOExample1-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22625 bytes Input file size = 22727 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 20405   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 20405 Output IDAT size = 20405 bytes (2220 bytes decrease) Output file size = 20483 bytes (2244 bytes = 9.87% decrease) Quitting from lines 170-171 [iETSOExample2] (oes.Rmd) Error: processing vignette 'oes.Rmd' failed with diagnostics: REAL() can only be applied to a 'numeric', not a 'logical' --- failed re-building ‘oes.Rmd’ --- re-building ‘simulate.Rmd’ using rmarkdown ** Processing: Figs/sim_es_ANN_plot_data-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12208 bytes Input file size = 13078 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11124   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10951   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10951 Output IDAT size = 10951 bytes (1257 bytes decrease) Output file size = 11029 bytes (2049 bytes = 15.67% decrease) ** Processing: Figs/sim_es_ANN_plot-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12138 bytes Input file size = 13008 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11051   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10854   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 10802   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 10802 Output IDAT size = 10802 bytes (1336 bytes decrease) Output file size = 10880 bytes (2128 bytes = 16.36% decrease) ** Processing: Figs/sim_es_MAdM-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 13327 bytes Input file size = 14197 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12378   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12200   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11125   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 11055   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 11055 Output IDAT size = 11055 bytes (2272 bytes decrease) Output file size = 11133 bytes (3064 bytes = 21.58% decrease) ** Processing: Figs/sim_es_MAdM_lnorm-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 28898 bytes Input file size = 29792 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27263   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17135   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17100   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17100 Output IDAT size = 17100 bytes (11798 bytes decrease) Output file size = 17178 bytes (12614 bytes = 42.34% decrease) ** Processing: Figs/sim_es_iMNN-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 13874 bytes Input file size = 14744 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12759   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12695   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 10099   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 10029   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 10029 Output IDAT size = 10029 bytes (3845 bytes decrease) Output file size = 10107 bytes (4637 bytes = 31.45% decrease) ** Processing: Figs/simulate_smooth_es_compare-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 26173 bytes Input file size = 27067 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24686   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17652   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17544   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17544 Output IDAT size = 17544 bytes (8629 bytes decrease) Output file size = 17622 bytes (9445 bytes = 34.89% decrease) ** Processing: Figs/sim_ssarima_(0,1,1)_plot-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8940 bytes Input file size = 9810 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7954   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7867   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7867 Output IDAT size = 7867 bytes (1073 bytes decrease) Output file size = 7945 bytes (1865 bytes = 19.01% decrease) ** Processing: Figs/sim_ssarima_(0,1,1)(1,0,2)_12_drift-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7653 bytes Input file size = 8511 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6978   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6928   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6928 Output IDAT size = 6928 bytes (725 bytes decrease) Output file size = 7006 bytes (1505 bytes = 17.68% decrease) ** Processing: Figs/sim_ssarima_(1,0,2)_1(0,1,1)_7(1,0,1)_30-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 19713 bytes Input file size = 20595 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18860   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 18232   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 16507   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 16306   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 16306 Output IDAT size = 16306 bytes (3407 bytes decrease) Output file size = 16384 bytes (4211 bytes = 20.45% decrease) ** Processing: Figs/sim_ssarima_(1,0,2)_1(0,1,1)_7intermittent-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 14132 bytes Input file size = 15002 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12959   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12907   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 10504   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 10450   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 10450 Output IDAT size = 10450 bytes (3682 bytes decrease) Output file size = 10528 bytes (4474 bytes = 29.82% decrease) ** Processing: Figs/simulate_smooth_ssarima_compare-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 23792 bytes Input file size = 24674 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22387   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 22008   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17850   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17761   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17761 Output IDAT size = 17761 bytes (6031 bytes decrease) Output file size = 17839 bytes (6835 bytes = 27.70% decrease) ** Processing: Figs/sim_ces_(n)_plot-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6262 bytes Input file size = 7120 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5358   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5358 Output IDAT size = 5358 bytes (904 bytes decrease) Output file size = 5436 bytes (1684 bytes = 23.65% decrease) ** Processing: Figs/sim_ces_(s)-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 39401 bytes Input file size = 40307 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37213   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 19583   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 19552   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 19552 Output IDAT size = 19552 bytes (19849 bytes decrease) Output file size = 19630 bytes (20677 bytes = 51.30% decrease) ** Processing: Figs/sim_ces_(s)_messing_arround-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 19982 bytes Input file size = 20864 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18545   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 13133   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 13100   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 13100 Output IDAT size = 13100 bytes (6882 bytes decrease) Output file size = 13178 bytes (7686 bytes = 36.84% decrease) ** Processing: Figs/sim_ces_(p)-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 24563 bytes Input file size = 25445 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23189   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 23183   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 16289   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 16240   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 16240 Output IDAT size = 16240 bytes (8323 bytes decrease) Output file size = 16318 bytes (9127 bytes = 35.87% decrease) ** Processing: Figs/sim_ces_(f)-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6196 bytes Input file size = 7054 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5427   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5376   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5376 Output IDAT size = 5376 bytes (820 bytes decrease) Output file size = 5454 bytes (1600 bytes = 22.68% decrease) ** Processing: Figs/simulate_smooth_ces_compare-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 26452 bytes Input file size = 27346 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25096   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 24773   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17519   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17428   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17428 Output IDAT size = 17428 bytes (9024 bytes decrease) Output file size = 17506 bytes (9840 bytes = 35.98% decrease) ** Processing: Figs/simulate_smooth_gum_compare-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 30478 bytes Input file size = 31372 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29086   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 28877   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 19164   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 19140   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 19140 Output IDAT size = 19140 bytes (11338 bytes decrease) Output file size = 19218 bytes (12154 bytes = 38.74% decrease) ** Processing: Figs/sim_sma_(10)-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 20333 bytes Input file size = 21215 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19116   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 18871   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15288   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15193   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15193 Output IDAT size = 15193 bytes (5140 bytes decrease) Output file size = 15271 bytes (5944 bytes = 28.02% decrease) ** Processing: Figs/simulate_smooth_sma-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 37669 bytes Input file size = 38575 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37081   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 35303   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 23511   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 22917   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 22917 Output IDAT size = 22917 bytes (14752 bytes decrease) Output file size = 22995 bytes (15580 bytes = 40.39% decrease) --- finished re-building ‘simulate.Rmd’ --- re-building ‘sma.Rmd’ using rmarkdown ** Processing: Figs/sma_N2457-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25651 bytes Input file size = 25765 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23222   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 22048   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 22048 Output IDAT size = 22048 bytes (3603 bytes decrease) Output file size = 22126 bytes (3639 bytes = 14.12% decrease) --- finished re-building ‘sma.Rmd’ --- re-building ‘smooth.Rmd’ using rmarkdown --- finished re-building ‘smooth.Rmd’ --- re-building ‘ssarima.Rmd’ using rmarkdown ** Processing: Figs/ssarima_N2457-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36477 bytes Input file size = 36603 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30306   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30306 Output IDAT size = 30306 bytes (6171 bytes decrease) Output file size = 30384 bytes (6219 bytes = 16.99% decrease) ** Processing: Figs/mssarima_N2457_orders_multiple_seasonalities-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27738 bytes Input file size = 27852 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23383   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23383 Output IDAT size = 23383 bytes (4355 bytes decrease) Output file size = 23461 bytes (4391 bytes = 15.77% decrease) --- finished re-building ‘ssarima.Rmd’ SUMMARY: processing the following files failed:   ‘adam.Rmd’ ‘oes.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR