• using R Under development (unstable) (2025-02-22 r87789)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 20.1.0-rc2     flang version 20.1.0-rc2
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘simDAG/DESCRIPTION’ ... OK
• this is package ‘simDAG’ version ‘0.2.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘simDAG’ can be installed ... [13s/15s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... NOTE   Missing dependency on R >= 4.1.0 because package code uses the pipe   |> or function shorthand \(...) syntax added in R 4.1.0.   File(s) using such syntax:     ‘formula_interface.r’ ‘node_time_to_event.r’
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [24s/24s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [17s/18s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [59s/67s] ERROR   Running ‘testthat.R’ [59s/67s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(simDAG)   > library(testthat)   > library(data.table)   > library(igraph)      Attaching package: 'igraph'      The following object is masked from 'package:testthat':          compare      The following objects are masked from 'package:stats':          decompose, spectrum      The following object is masked from 'package:base':          union      >   > data.table::setDTthreads(1)   >   > test_check("simDAG")   Loading required namespace: MASS   Loading required namespace: ggplot2   Loading required namespace: ggforce   t = 1 node = sickness2   t = 1 node = sickness1   t = 2 node = sickness2   t = 2 node = sickness1   t = 3 node = sickness2   t = 3 node = sickness1   t = 4 node = sickness2   t = 4 node = sickness1   t = 5 node = sickness2   t = 5 node = sickness1   Loading required namespace: Rfast   Loading required namespace: doSNOW   Loading required namespace: doRNG   starting worker pid=2205355 on localhost:11161 at 09:48:54.923   starting worker pid=2205356 on localhost:11161 at 09:48:54.943        |     | | 0%Loading required package: simDAG   loaded simDAG and set parent environment   Loading required package: foreach   Loading required package: rngtools   Loading required package: simDAG   loaded simDAG and set parent environment   Loading required package: foreach   Loading required package: rngtools        |     |======= | 10%     |     |============== | 20%     |     |===================== | 30%     |     |============================ | 40%     |     |=================================== | 50%     |     |========================================== | 60%     |     |================================================= | 70%     |     |======================================================== | 80%     |     |=============================================================== | 90%     |     |======================================================================| 100%starting worker pid=2205398 on localhost:11161 at 09:48:56.126   starting worker pid=2205399 on localhost:11161 at 09:48:56.276   Loading required package: simDAG   loaded simDAG and set parent environment   Loading required package: foreach   Loading required package: rngtools   Loading required package: simDAG   loaded simDAG and set parent environment   Loading required package: foreach   Loading required package: rngtools   starting worker pid=2205521 on localhost:11161 at 09:48:59.427   starting worker pid=2205522 on localhost:11161 at 09:48:59.428   Loading required package: simDAG   loaded simDAG and set parent environment   Loading required package: foreach   Loading required package: rngtools   Loading required package: simDAG   loaded simDAG and set parent environment   Loading required package: foreach   Loading required package: rngtools   [ FAIL 2 | WARN 14 | SKIP 43 | PASS 611 ]      ══ Skipped tests (43) ══════════════════════════════════════════════════════════   • On CRAN (43): 'test_DAG.node_S3.r:6:3', 'test_DAG.node_S3.r:11:3',     'test_DAG.node_S3.r:16:3', 'test_DAG.node_S3.r:21:3',     'test_DAG.node_S3.r:27:3', 'test_DAG.node_S3.r:34:3',     'test_DAG.node_S3.r:39:3', 'test_DAG.node_S3.r:44:3',     'test_DAG.node_S3.r:49:3', 'test_DAG.node_S3.r:55:3', 'test_dag.r:17:3',     'test_dag.r:30:3', 'test_dag.r:37:3', 'test_dag.r:50:3', 'test_dag.r:66:3',     'test_node.r:519:3', 'test_plot.DAG.r:12:3', 'test_plot.DAG.r:16:3',     'test_plot.DAG.r:20:3', 'test_plot.DAG.r:24:3', 'test_plot.DAG.r:28:3',     'test_plot.DAG.r:32:3', 'test_plot.DAG.r:36:3', 'test_plot.DAG.r:41:3',     'test_plot.DAG.r:45:3', 'test_plot.DAG.r:53:3', 'test_plot.DAG.r:60:3',     'test_plot.DAG.r:65:3', 'test_plot.DAG.r:70:3', 'test_plot.DAG.r:101:3',     'test_plot.DAG.r:105:3', 'test_plot.DAG.r:109:3', 'test_plot.simDT.r:25:3',     'test_plot.simDT.r:29:3', 'test_plot.simDT.r:33:3', 'test_plot.simDT.r:37:3',     'test_plot.simDT.r:41:3', 'test_plot.simDT.r:49:3', 'test_plot.simDT.r:57:3',     'test_simDT_S3.r:12:3', 'test_simDT_S3.r:17:3', 'test_simDT_S3.r:22:3',     'test_simDT_S3.r:26:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_sim_discrete_time.r:290:3'): helpful error message formula error ──   Error: An error occured when interpreting the formula of node 'B'. The message was:   Error: Error in `[.data.table`(mod_mat, , args$parents, with = FALSE): columns not found: [A, C]   This error may occur when one of the terms in a supplied formula does not match any variables in the generated data.    Please check whether all terms in your supplied formula occur in the data generated up to this point.    The variables currently available in data are:   (Intercept), ATRUE, B, .id      Backtrace:        ▆     1. ├─testthat::expect_error(...) at test_sim_discrete_time.r:290:3     2. │ └─testthat:::expect_condition_matching(...)     3. │ └─testthat:::quasi_capture(...)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─base::withCallingHandlers(...)     6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     7. └─simDAG::sim_discrete_time(dag, n_sim = 100, max_t = 3)     8. └─base::tryCatch(...)     9. └─base (local) tryCatchList(expr, classes, parentenv, handlers)    10. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    11. └─value[[3L]](cond)   ── Error ('test_sim_from_dag.r:102:3'): helpful error message formula error ────   Error: An error occured when interpreting the formula of node 'B'. The message was:   Error: Error in `[.data.table`(mod_mat, , args$parents, with = FALSE): columns not found: [A, C]   This error may occur when one of the terms in a supplied formula does not match any variables in the generated data.    Please check whether all terms in your supplied formula occur in the data generated up to this point.    The variables currently available in data are:   (Intercept), ATRUE      Backtrace:        ▆     1. ├─testthat::expect_error(...) at test_sim_from_dag.r:102:3     2. │ └─testthat:::expect_condition_matching(...)     3. │ └─testthat:::quasi_capture(...)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─base::withCallingHandlers(...)     6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     7. └─simDAG::sim_from_dag(dag, n_sim = 100)     8. └─base::tryCatch(...)     9. └─base (local) tryCatchList(expr, classes, parentenv, handlers)    10. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    11. └─value[[3L]](cond)      [ FAIL 2 | WARN 14 | SKIP 43 | PASS 611 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [37s/37s] OK
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE