* installing *source* package ‘seededlda’ ...
** package ‘seededlda’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 accepts -g... yes
checking for /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -E
checking for gcc... /usr/local/clang19/bin/clang
checking whether the compiler supports GNU C... yes
checking whether /usr/local/clang19/bin/clang accepts -g... yes
checking for /usr/local/clang19/bin/clang option to enable C11 features... none needed
checking whether the compiler supports GNU C++... (cached) yes
checking whether /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 accepts -g... (cached) yes
checking for /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 option to enable C++11 features... (cached) none needed
checking Intel TBB existence:... no
configure: WARNING: Intel TBB not installed; install TBB devel package for parallel processing or update PKG_CONFIG_PATH environment variable
configure: Package CPP flags: 
configure: Package LIBS: 
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/seededlda/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/quanteda/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -I../inst/include  -DARMA_64BIT_WORD=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/quanteda/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -I../inst/include  -DARMA_64BIT_WORD=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c lda.cpp -o lda.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/quanteda/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -I../inst/include  -DARMA_64BIT_WORD=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c test-array.cpp -o test-array.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/quanteda/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -I../inst/include  -DARMA_64BIT_WORD=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c test-runner.cpp -o test-runner.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/quanteda/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -I../inst/include  -DARMA_64BIT_WORD=1 -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c utility.cpp -o utility.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o seededlda.so RcppExports.o lda.o test-array.o test-runner.o utility.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/seededlda/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/seededlda/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/seededlda/src'
installing to /data/gannet/ripley/R/packages/tests-clang/seededlda.Rcheck/00LOCK-seededlda/00new/seededlda/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (seededlda)