* installing *source* package ‘rsides’ ...
** package ‘rsides’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.7’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rsides/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c rsides.cpp -o rsides.o
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from rsides.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from rsides.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from rsides.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
5 warnings generated.
In file included from rsides.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
rsides.cpp:3215:9: warning: variable 'n_parent_rows' set but not used [-Wunused-but-set-variable]
 3215 |     int n_parent_rows = 0;
      |         ^
rsides.cpp:3518:9: warning: variable 'sign' set but not used [-Wunused-but-set-variable]
 3518 |     int sign = -1;
      |         ^
rsides.cpp:3795:9: warning: variable 'sign' set but not used [-Wunused-but-set-variable]
 3795 |     int sign;
      |         ^
rsides.cpp:4551:9: warning: variable 'n_parent_rows' set but not used [-Wunused-but-set-variable]
 4551 |     int n_parent_rows = 0;
      |         ^
rsides.cpp:4597:9: warning: variable 'sign' set but not used [-Wunused-but-set-variable]
 4597 |     int sign=-1;
      |         ^
rsides.cpp:4881:9: warning: variable 'n_parent_rows' set but not used [-Wunused-but-set-variable]
 4881 |     int n_parent_rows = 0;
      |         ^
rsides.cpp:5135:9: warning: variable 'n_parent_rows' set but not used [-Wunused-but-set-variable]
 5135 |     int n_parent_rows = 0;
      |         ^
rsides.cpp:8155:9: warning: variable 'n_subgroups' set but not used [-Wunused-but-set-variable]
 8155 |     int n_subgroups;
      |         ^
rsides.cpp:8495:12: warning: variable 'error_rate' set but not used [-Wunused-but-set-variable]
 8495 |     double error_rate = 0.0;
      |            ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:486:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix<double>::const_iterator1, double>' requested here
  486 |             public random_access_iterator_base<dense_random_access_iterator_tag,
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:714:50: note: in instantiation of member class 'boost::numeric::ublas::matrix<double>::const_iterator1' requested here
  714 |             public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
      |                                                  ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_proxy.hpp:265:50: note: in instantiation of member class 'boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>::const_iterator' requested here
  265 |             public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
      |                                                  ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_expression.hpp:1510:29: note: in instantiation of member class 'boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>::const_iterator' requested here
 1510 |         typedef typename E::const_iterator::iterator_category iterator_category;
      |                             ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_expression.hpp:1638:16: note: in instantiation of template class 'boost::numeric::ublas::vector_scalar_unary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_index_norm_inf<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>>>' requested here
 1638 |         return expression_type (e ());
      |                ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:145:40: note: in instantiation of function template specialization 'boost::numeric::ublas::index_norm_inf<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>>' requested here
  145 |             size_type i_norm_inf = i + index_norm_inf (project (mci, range (i, size1)));
      |                                        ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
 1587 |     int res = lu_factorize(A,pm); 
      |               ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:714:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>::const_iterator, double>' requested here
  714 |             public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_proxy.hpp:265:50: note: in instantiation of member class 'boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>::const_iterator' requested here
  265 |             public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
      |                                                  ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_expression.hpp:1510:29: note: in instantiation of member class 'boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>::const_iterator' requested here
 1510 |         typedef typename E::const_iterator::iterator_category iterator_category;
      |                             ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_expression.hpp:1638:16: note: in instantiation of template class 'boost::numeric::ublas::vector_scalar_unary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_index_norm_inf<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>>>' requested here
 1638 |         return expression_type (e ());
      |                ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:145:40: note: in instantiation of function template specialization 'boost::numeric::ublas::index_norm_inf<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>>' requested here
  145 |             size_type i_norm_inf = i + index_norm_inf (project (mci, range (i, size1)));
      |                                        ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
 1587 |     int res = lu_factorize(A,pm); 
      |               ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_proxy.hpp:265:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>::const_iterator, double>' requested here
  265 |             public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_expression.hpp:1510:29: note: in instantiation of member class 'boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>::const_iterator' requested here
 1510 |         typedef typename E::const_iterator::iterator_category iterator_category;
      |                             ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_expression.hpp:1638:16: note: in instantiation of template class 'boost::numeric::ublas::vector_scalar_unary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_index_norm_inf<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>>>' requested here
 1638 |         return expression_type (e ());
      |                ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:145:40: note: in instantiation of function template specialization 'boost::numeric::ublas::index_norm_inf<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>>' requested here
  145 |             size_type i_norm_inf = i + index_norm_inf (project (mci, range (i, size1)));
      |                                        ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
 1587 |     int res = lu_factorize(A,pm); 
      |               ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:809:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix<double>::const_iterator2, double>' requested here
  809 |             public random_access_iterator_base<dense_random_access_iterator_tag,
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:241:50: note: in instantiation of member class 'boost::numeric::ublas::matrix<double>::const_iterator2' requested here
  241 |             public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
      |                                                  ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/vector_assign.hpp:603:57: note: in instantiation of member class 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::const_iterator' requested here
  603 |                                             typename E::const_iterator::iterator_category>::storage_category storage_category;
      |                                                         ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:192:17: note: in instantiation of function template specialization 'boost::numeric::ublas::vector_swap<boost::numeric::ublas::scalar_swap, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>' requested here
  192 |                 vector_swap<scalar_swap> (*this, mr);
      |                 ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:150:41: note: in instantiation of member function 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::swap' requested here
  150 |                     row (m, i_norm_inf).swap (mri);
      |                                         ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
 1587 |     int res = lu_factorize(A,pm); 
      |               ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:241:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::const_iterator, double>' requested here
  241 |             public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/vector_assign.hpp:603:57: note: in instantiation of member class 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::const_iterator' requested here
  603 |                                             typename E::const_iterator::iterator_category>::storage_category storage_category;
      |                                                         ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:192:17: note: in instantiation of function template specialization 'boost::numeric::ublas::vector_swap<boost::numeric::ublas::scalar_swap, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>' requested here
  192 |                 vector_swap<scalar_swap> (*this, mr);
      |                 ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:150:41: note: in instantiation of member function 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::swap' requested here
  150 |                     row (m, i_norm_inf).swap (mri);
      |                                         ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
 1587 |     int res = lu_factorize(A,pm); 
      |               ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:990:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix<double>::iterator2, double>' requested here
  990 |             public random_access_iterator_base<dense_random_access_iterator_tag,
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:349:50: note: in instantiation of member class 'boost::numeric::ublas::matrix<double>::iterator2' requested here
  349 |             public iterator_base_traits<typename subiterator_type::iterator_category>::template
      |                                                  ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/vector_assign.hpp:509:31: note: in instantiation of member class 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::iterator' requested here
  509 |         typedef F<typename V::iterator::reference, typename E::iterator::reference> functor_type;
      |                               ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/vector_assign.hpp:604:9: note: in instantiation of function template specialization 'boost::numeric::ublas::vector_swap<boost::numeric::ublas::scalar_swap, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>' requested here
  604 |         vector_swap<F> (v, e, storage_category ());
      |         ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:192:17: note: in instantiation of function template specialization 'boost::numeric::ublas::vector_swap<boost::numeric::ublas::scalar_swap, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>' requested here
  192 |                 vector_swap<scalar_swap> (*this, mr);
      |                 ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:150:41: note: in instantiation of member function 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::swap' requested here
  150 |                     row (m, i_norm_inf).swap (mri);
      |                                         ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
 1587 |     int res = lu_factorize(A,pm); 
      |               ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:349:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::iterator, double>' requested here
  349 |             public iterator_base_traits<typename subiterator_type::iterator_category>::template
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/vector_assign.hpp:509:31: note: in instantiation of member class 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::iterator' requested here
  509 |         typedef F<typename V::iterator::reference, typename E::iterator::reference> functor_type;
      |                               ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/vector_assign.hpp:604:9: note: in instantiation of function template specialization 'boost::numeric::ublas::vector_swap<boost::numeric::ublas::scalar_swap, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>' requested here
  604 |         vector_swap<F> (v, e, storage_category ());
      |         ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:192:17: note: in instantiation of function template specialization 'boost::numeric::ublas::vector_swap<boost::numeric::ublas::scalar_swap, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>' requested here
  192 |                 vector_swap<scalar_swap> (*this, mr);
      |                 ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:150:41: note: in instantiation of member function 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::swap' requested here
  150 |                     row (m, i_norm_inf).swap (mri);
      |                                         ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
 1587 |     int res = lu_factorize(A,pm); 
      |               ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_proxy.hpp:265:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>::const_iterator, double>' requested here
  265 |             public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:461:19: note: in instantiation of member class 'boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>::const_iterator' requested here
  461 |             typename E2::const_iterator::iterator_category>::iterator_category>::template
      |                          ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1364:59: note: in instantiation of member class 'boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>::const_iterator1' requested here
 1364 |                                               typename E::const_iterator1::iterator_category,
      |                                                           ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:2548:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_minus_assign, boost::numeric::ublas::matrix_range<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>>' requested here
 2548 |             matrix_assign<scalar_minus_assign> (*this, ae);
      |             ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:159:69: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_range<boost::numeric::ublas::matrix<double>>::minus_assign<boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>>' requested here
  159 |             project (m, range (i + 1, size1), range (i + 1, size2)).minus_assign (
      |                                                                     ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
 1587 |     int res = lu_factorize(A,pm); 
      |               ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:460:13: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>::const_iterator1, double>' requested here
  460 |             public iterator_base_traits<typename iterator_restrict_traits<typename E1::const_iterator::iterator_category,
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1364:59: note: in instantiation of member class 'boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>::const_iterator1' requested here
 1364 |                                               typename E::const_iterator1::iterator_category,
      |                                                           ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:2548:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_minus_assign, boost::numeric::ublas::matrix_range<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>>' requested here
 2548 |             matrix_assign<scalar_minus_assign> (*this, ae);
      |             ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:159:69: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_range<boost::numeric::ublas::matrix<double>>::minus_assign<boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>>' requested here
  159 |             project (m, range (i + 1, size1), range (i + 1, size2)).minus_assign (
      |                                                                     ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
 1587 |     int res = lu_factorize(A,pm); 
      |               ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:661:13: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>::const_iterator2, double>' requested here
  661 |             public iterator_base_traits<typename iterator_restrict_traits<typename E1::const_iterator::iterator_category,
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1365:59: note: in instantiation of member class 'boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>::const_iterator2' requested here
 1365 |                                               typename E::const_iterator2::iterator_category>::storage_category storage_category;
      |                                                           ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:2548:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_minus_assign, boost::numeric::ublas::matrix_range<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>>' requested here
 2548 |             matrix_assign<scalar_minus_assign> (*this, ae);
      |             ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:159:69: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_range<boost::numeric::ublas::matrix<double>>::minus_assign<boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>>' requested here
  159 |             project (m, range (i + 1, size1), range (i + 1, size2)).minus_assign (
      |                                                                     ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
 1587 |     int res = lu_factorize(A,pm); 
      |               ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'iterator<boost::numeric::ublas::sparse_bidirectional_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  149 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:4059:20: note: in instantiation of template class 'boost::numeric::ublas::bidirectional_iterator_base<boost::numeric::ublas::sparse_bidirectional_iterator_tag, boost::numeric::ublas::identity_matrix<double>::const_iterator1, double>' requested here
 4059 |             public bidirectional_iterator_base<sparse_bidirectional_iterator_tag,
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1364:59: note: in instantiation of member class 'boost::numeric::ublas::identity_matrix<double>::const_iterator1' requested here
 1364 |                                               typename E::const_iterator1::iterator_category,
      |                                                           ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:359:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_assign, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::identity_matrix<double>>' requested here
  359 |             matrix_assign<scalar_assign> (*this, ae);
      |             ^
rsides.cpp:1590:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix<double>::assign<boost::numeric::ublas::identity_matrix<double>>' requested here
 1590 |     inverse.assign(ublas::identity_matrix<double>(A.size1())); 
      |             ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::sparse_bidirectional_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'iterator<boost::numeric::ublas::sparse_bidirectional_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  149 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:4207:20: note: in instantiation of template class 'boost::numeric::ublas::bidirectional_iterator_base<boost::numeric::ublas::sparse_bidirectional_iterator_tag, boost::numeric::ublas::identity_matrix<double>::const_iterator2, double>' requested here
 4207 |             public bidirectional_iterator_base<sparse_bidirectional_iterator_tag,
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1365:59: note: in instantiation of member class 'boost::numeric::ublas::identity_matrix<double>::const_iterator2' requested here
 1365 |                                               typename E::const_iterator2::iterator_category>::storage_category storage_category;
      |                                                           ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:359:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_assign, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::identity_matrix<double>>' requested here
  359 |             matrix_assign<scalar_assign> (*this, ae);
      |             ^
rsides.cpp:1590:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix<double>::assign<boost::numeric::ublas::identity_matrix<double>>' requested here
 1590 |     inverse.assign(ublas::identity_matrix<double>(A.size1())); 
      |             ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::sparse_bidirectional_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:1596:13: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>::const_iterator1, double>' requested here
 1596 |             public iterator_base_traits<typename E::const_iterator2::iterator_category>::template
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:4961:81: note: in instantiation of member class 'boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>::const_iterator1' requested here
 4961 |             public iterator_base_traits<typename iterator_restrict_traits<typename E1::const_iterator1::iterator_category,
      |                                                                                        ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1364:59: note: in instantiation of member class 'boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>::const_iterator1' requested here
 1364 |                                               typename E::const_iterator1::iterator_category,
      |                                                           ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:172:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_assign, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>>' requested here
  172 |             matrix_assign<scalar_assign> (*this, ae);
      |             ^
rsides.cpp:1812:34: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix<double>::matrix<boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>>' requested here
 1812 |     ublas::matrix<double> trxx = prod(trans(x), x);
      |                                  ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:4961:13: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>::const_iterator1, double>' requested here
 4961 |             public iterator_base_traits<typename iterator_restrict_traits<typename E1::const_iterator1::iterator_category,
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1364:59: note: in instantiation of member class 'boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>::const_iterator1' requested here
 1364 |                                               typename E::const_iterator1::iterator_category,
      |                                                           ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:172:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_assign, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>>' requested here
  172 |             matrix_assign<scalar_assign> (*this, ae);
      |             ^
rsides.cpp:1812:34: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix<double>::matrix<boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>>' requested here
 1812 |     ublas::matrix<double> trxx = prod(trans(x), x);
      |                                  ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:5223:13: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>::const_iterator2, double>' requested here
 5223 |             public iterator_base_traits<typename iterator_restrict_traits<typename E1::const_iterator1::iterator_category,
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1365:59: note: in instantiation of member class 'boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>::const_iterator2' requested here
 1365 |                                               typename E::const_iterator2::iterator_category>::storage_category storage_category;
      |                                                           ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:172:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_assign, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>>' requested here
  172 |             matrix_assign<scalar_assign> (*this, ae);
      |             ^
rsides.cpp:1812:34: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix<double>::matrix<boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>>' requested here
 1812 |     ublas::matrix<double> trxx = prod(trans(x), x);
      |                                  ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:4961:13: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>::const_iterator1, double>' requested here
 4961 |             public iterator_base_traits<typename iterator_restrict_traits<typename E1::const_iterator1::iterator_category,
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1364:59: note: in instantiation of member class 'boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>::const_iterator1' requested here
 1364 |                                               typename E::const_iterator1::iterator_category,
      |                                                           ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:172:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_assign, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>>' requested here
  172 |             matrix_assign<scalar_assign> (*this, ae);
      |             ^
rsides.cpp:1817:33: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix<double>::matrix<boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>>' requested here
 1817 |     ublas::matrix<double> est = prod(trxx_inv, txy);
      |                                 ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:5223:13: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>::const_iterator2, double>' requested here
 5223 |             public iterator_base_traits<typename iterator_restrict_traits<typename E1::const_iterator1::iterator_category,
      |                    ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1365:59: note: in instantiation of member class 'boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>::const_iterator2' requested here
 1365 |                                               typename E::const_iterator2::iterator_category>::storage_category storage_category;
      |                                                           ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:172:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_assign, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>>' requested here
  172 |             matrix_assign<scalar_assign> (*this, ae);
      |             ^
rsides.cpp:1817:33: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix<double>::matrix<boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>>' requested here
 1817 |     ublas::matrix<double> est = prod(trxx_inv, txy);
      |                                 ^
/usr/local/clang18/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/usr/local/clang18/bin/../include/c++/v1/__config:1001:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
 1001 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/usr/local/clang18/bin/../include/c++/v1/__config:974:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  974 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
31 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o rsides.so RcppExports.o rsides.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rsides/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rsides/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rsides/src'
installing to /data/gannet/ripley/R/packages/tests-clang/rsides.Rcheck/00LOCK-rsides/00new/rsides/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rsides)