* installing *source* package ‘rsides’ ...
** package ‘rsides’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.3’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rsides/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
5 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rsides.cpp -o rsides.o
In file included from rsides.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from rsides.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from rsides.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from rsides.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
rsides.cpp:3215:9: warning: variable 'n_parent_rows' set but not used [-Wunused-but-set-variable]
3215 | int n_parent_rows = 0;
| ^
rsides.cpp:3518:9: warning: variable 'sign' set but not used [-Wunused-but-set-variable]
3518 | int sign = -1;
| ^
rsides.cpp:3795:9: warning: variable 'sign' set but not used [-Wunused-but-set-variable]
3795 | int sign;
| ^
rsides.cpp:4551:9: warning: variable 'n_parent_rows' set but not used [-Wunused-but-set-variable]
4551 | int n_parent_rows = 0;
| ^
rsides.cpp:4597:9: warning: variable 'sign' set but not used [-Wunused-but-set-variable]
4597 | int sign=-1;
| ^
rsides.cpp:4881:9: warning: variable 'n_parent_rows' set but not used [-Wunused-but-set-variable]
4881 | int n_parent_rows = 0;
| ^
rsides.cpp:5135:9: warning: variable 'n_parent_rows' set but not used [-Wunused-but-set-variable]
5135 | int n_parent_rows = 0;
| ^
rsides.cpp:8155:9: warning: variable 'n_subgroups' set but not used [-Wunused-but-set-variable]
8155 | int n_subgroups;
| ^
rsides.cpp:8495:12: warning: variable 'error_rate' set but not used [-Wunused-but-set-variable]
8495 | double error_rate = 0.0;
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:486:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix<double>::const_iterator1, double>' requested here
486 | public random_access_iterator_base<dense_random_access_iterator_tag,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:714:50: note: in instantiation of member class 'boost::numeric::ublas::matrix<double>::const_iterator1' requested here
714 | public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_proxy.hpp:265:50: note: in instantiation of member class 'boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>::const_iterator' requested here
265 | public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_expression.hpp:1510:29: note: in instantiation of member class 'boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>::const_iterator' requested here
1510 | typedef typename E::const_iterator::iterator_category iterator_category;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_expression.hpp:1638:16: note: in instantiation of template class 'boost::numeric::ublas::vector_scalar_unary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_index_norm_inf<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>>>' requested here
1638 | return expression_type (e ());
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:145:40: note: in instantiation of function template specialization 'boost::numeric::ublas::index_norm_inf<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>>' requested here
145 | size_type i_norm_inf = i + index_norm_inf (project (mci, range (i, size1)));
| ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
1587 | int res = lu_factorize(A,pm);
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:714:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>::const_iterator, double>' requested here
714 | public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_proxy.hpp:265:50: note: in instantiation of member class 'boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>::const_iterator' requested here
265 | public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_expression.hpp:1510:29: note: in instantiation of member class 'boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>::const_iterator' requested here
1510 | typedef typename E::const_iterator::iterator_category iterator_category;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_expression.hpp:1638:16: note: in instantiation of template class 'boost::numeric::ublas::vector_scalar_unary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_index_norm_inf<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>>>' requested here
1638 | return expression_type (e ());
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:145:40: note: in instantiation of function template specialization 'boost::numeric::ublas::index_norm_inf<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>>' requested here
145 | size_type i_norm_inf = i + index_norm_inf (project (mci, range (i, size1)));
| ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
1587 | int res = lu_factorize(A,pm);
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_proxy.hpp:265:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>::const_iterator, double>' requested here
265 | public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_expression.hpp:1510:29: note: in instantiation of member class 'boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>::const_iterator' requested here
1510 | typedef typename E::const_iterator::iterator_category iterator_category;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_expression.hpp:1638:16: note: in instantiation of template class 'boost::numeric::ublas::vector_scalar_unary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_index_norm_inf<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>>>' requested here
1638 | return expression_type (e ());
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:145:40: note: in instantiation of function template specialization 'boost::numeric::ublas::index_norm_inf<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>>' requested here
145 | size_type i_norm_inf = i + index_norm_inf (project (mci, range (i, size1)));
| ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
1587 | int res = lu_factorize(A,pm);
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:809:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix<double>::const_iterator2, double>' requested here
809 | public random_access_iterator_base<dense_random_access_iterator_tag,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:241:50: note: in instantiation of member class 'boost::numeric::ublas::matrix<double>::const_iterator2' requested here
241 | public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/vector_assign.hpp:603:57: note: in instantiation of member class 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::const_iterator' requested here
603 | typename E::const_iterator::iterator_category>::storage_category storage_category;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:192:17: note: in instantiation of function template specialization 'boost::numeric::ublas::vector_swap<boost::numeric::ublas::scalar_swap, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>' requested here
192 | vector_swap<scalar_swap> (*this, mr);
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:150:41: note: in instantiation of member function 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::swap' requested here
150 | row (m, i_norm_inf).swap (mri);
| ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
1587 | int res = lu_factorize(A,pm);
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:241:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::const_iterator, double>' requested here
241 | public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/vector_assign.hpp:603:57: note: in instantiation of member class 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::const_iterator' requested here
603 | typename E::const_iterator::iterator_category>::storage_category storage_category;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:192:17: note: in instantiation of function template specialization 'boost::numeric::ublas::vector_swap<boost::numeric::ublas::scalar_swap, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>' requested here
192 | vector_swap<scalar_swap> (*this, mr);
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:150:41: note: in instantiation of member function 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::swap' requested here
150 | row (m, i_norm_inf).swap (mri);
| ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
1587 | int res = lu_factorize(A,pm);
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:990:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix<double>::iterator2, double>' requested here
990 | public random_access_iterator_base<dense_random_access_iterator_tag,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:349:50: note: in instantiation of member class 'boost::numeric::ublas::matrix<double>::iterator2' requested here
349 | public iterator_base_traits<typename subiterator_type::iterator_category>::template
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/vector_assign.hpp:509:31: note: in instantiation of member class 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::iterator' requested here
509 | typedef F<typename V::iterator::reference, typename E::iterator::reference> functor_type;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/vector_assign.hpp:604:9: note: in instantiation of function template specialization 'boost::numeric::ublas::vector_swap<boost::numeric::ublas::scalar_swap, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>' requested here
604 | vector_swap<F> (v, e, storage_category ());
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:192:17: note: in instantiation of function template specialization 'boost::numeric::ublas::vector_swap<boost::numeric::ublas::scalar_swap, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>' requested here
192 | vector_swap<scalar_swap> (*this, mr);
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:150:41: note: in instantiation of member function 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::swap' requested here
150 | row (m, i_norm_inf).swap (mri);
| ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
1587 | int res = lu_factorize(A,pm);
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:349:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::iterator, double>' requested here
349 | public iterator_base_traits<typename subiterator_type::iterator_category>::template
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/vector_assign.hpp:509:31: note: in instantiation of member class 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::iterator' requested here
509 | typedef F<typename V::iterator::reference, typename E::iterator::reference> functor_type;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/vector_assign.hpp:604:9: note: in instantiation of function template specialization 'boost::numeric::ublas::vector_swap<boost::numeric::ublas::scalar_swap, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>' requested here
604 | vector_swap<F> (v, e, storage_category ());
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:192:17: note: in instantiation of function template specialization 'boost::numeric::ublas::vector_swap<boost::numeric::ublas::scalar_swap, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>' requested here
192 | vector_swap<scalar_swap> (*this, mr);
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:150:41: note: in instantiation of member function 'boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>::swap' requested here
150 | row (m, i_norm_inf).swap (mri);
| ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
1587 | int res = lu_factorize(A,pm);
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector_proxy.hpp:265:20: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>::const_iterator, double>' requested here
265 | public iterator_base_traits<typename const_subiterator_type::iterator_category>::template
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:461:19: note: in instantiation of member class 'boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>::const_iterator' requested here
461 | typename E2::const_iterator::iterator_category>::iterator_category>::template
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1364:59: note: in instantiation of member class 'boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>::const_iterator1' requested here
1364 | typename E::const_iterator1::iterator_category,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:2548:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_minus_assign, boost::numeric::ublas::matrix_range<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>>' requested here
2548 | matrix_assign<scalar_minus_assign> (*this, ae);
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:159:69: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_range<boost::numeric::ublas::matrix<double>>::minus_assign<boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>>' requested here
159 | project (m, range (i + 1, size1), range (i + 1, size2)).minus_assign (
| ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
1587 | int res = lu_factorize(A,pm);
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:460:13: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>::const_iterator1, double>' requested here
460 | public iterator_base_traits<typename iterator_restrict_traits<typename E1::const_iterator::iterator_category,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1364:59: note: in instantiation of member class 'boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>::const_iterator1' requested here
1364 | typename E::const_iterator1::iterator_category,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:2548:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_minus_assign, boost::numeric::ublas::matrix_range<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>>' requested here
2548 | matrix_assign<scalar_minus_assign> (*this, ae);
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:159:69: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_range<boost::numeric::ublas::matrix<double>>::minus_assign<boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>>' requested here
159 | project (m, range (i + 1, size1), range (i + 1, size2)).minus_assign (
| ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
1587 | int res = lu_factorize(A,pm);
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:661:13: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>::const_iterator2, double>' requested here
661 | public iterator_base_traits<typename iterator_restrict_traits<typename E1::const_iterator::iterator_category,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1365:59: note: in instantiation of member class 'boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>::const_iterator2' requested here
1365 | typename E::const_iterator2::iterator_category>::storage_category storage_category;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_proxy.hpp:2548:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_minus_assign, boost::numeric::ublas::matrix_range<boost::numeric::ublas::matrix<double>>, boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>>' requested here
2548 | matrix_assign<scalar_minus_assign> (*this, ae);
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/lu.hpp:159:69: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_range<boost::numeric::ublas::matrix<double>>::minus_assign<boost::numeric::ublas::vector_matrix_binary<boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_column<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::vector_range<boost::numeric::ublas::matrix_row<boost::numeric::ublas::matrix<double>>>, boost::numeric::ublas::scalar_multiplies<double, double>>>' requested here
159 | project (m, range (i + 1, size1), range (i + 1, size2)).minus_assign (
| ^
rsides.cpp:1587:15: note: in instantiation of function template specialization 'boost::numeric::ublas::lu_factorize<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::permutation_matrix<>>' requested here
1587 | int res = lu_factorize(A,pm);
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'iterator<boost::numeric::ublas::sparse_bidirectional_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:4059:20: note: in instantiation of template class 'boost::numeric::ublas::bidirectional_iterator_base<boost::numeric::ublas::sparse_bidirectional_iterator_tag, boost::numeric::ublas::identity_matrix<double>::const_iterator1, double>' requested here
4059 | public bidirectional_iterator_base<sparse_bidirectional_iterator_tag,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1364:59: note: in instantiation of member class 'boost::numeric::ublas::identity_matrix<double>::const_iterator1' requested here
1364 | typename E::const_iterator1::iterator_category,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:359:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_assign, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::identity_matrix<double>>' requested here
359 | matrix_assign<scalar_assign> (*this, ae);
| ^
rsides.cpp:1590:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix<double>::assign<boost::numeric::ublas::identity_matrix<double>>' requested here
1590 | inverse.assign(ublas::identity_matrix<double>(A.size1()));
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::sparse_bidirectional_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'iterator<boost::numeric::ublas::sparse_bidirectional_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:4207:20: note: in instantiation of template class 'boost::numeric::ublas::bidirectional_iterator_base<boost::numeric::ublas::sparse_bidirectional_iterator_tag, boost::numeric::ublas::identity_matrix<double>::const_iterator2, double>' requested here
4207 | public bidirectional_iterator_base<sparse_bidirectional_iterator_tag,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1365:59: note: in instantiation of member class 'boost::numeric::ublas::identity_matrix<double>::const_iterator2' requested here
1365 | typename E::const_iterator2::iterator_category>::storage_category storage_category;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:359:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_assign, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::identity_matrix<double>>' requested here
359 | matrix_assign<scalar_assign> (*this, ae);
| ^
rsides.cpp:1590:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix<double>::assign<boost::numeric::ublas::identity_matrix<double>>' requested here
1590 | inverse.assign(ublas::identity_matrix<double>(A.size1()));
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::sparse_bidirectional_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:1596:13: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>::const_iterator1, double>' requested here
1596 | public iterator_base_traits<typename E::const_iterator2::iterator_category>::template
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:4961:81: note: in instantiation of member class 'boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>::const_iterator1' requested here
4961 | public iterator_base_traits<typename iterator_restrict_traits<typename E1::const_iterator1::iterator_category,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1364:59: note: in instantiation of member class 'boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>::const_iterator1' requested here
1364 | typename E::const_iterator1::iterator_category,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:172:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_assign, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>>' requested here
172 | matrix_assign<scalar_assign> (*this, ae);
| ^
rsides.cpp:1812:34: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix<double>::matrix<boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>>' requested here
1812 | ublas::matrix<double> trxx = prod(trans(x), x);
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:4961:13: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>::const_iterator1, double>' requested here
4961 | public iterator_base_traits<typename iterator_restrict_traits<typename E1::const_iterator1::iterator_category,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1364:59: note: in instantiation of member class 'boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>::const_iterator1' requested here
1364 | typename E::const_iterator1::iterator_category,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:172:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_assign, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>>' requested here
172 | matrix_assign<scalar_assign> (*this, ae);
| ^
rsides.cpp:1812:34: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix<double>::matrix<boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>>' requested here
1812 | ublas::matrix<double> trxx = prod(trans(x), x);
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:5223:13: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>::const_iterator2, double>' requested here
5223 | public iterator_base_traits<typename iterator_restrict_traits<typename E1::const_iterator1::iterator_category,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1365:59: note: in instantiation of member class 'boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>::const_iterator2' requested here
1365 | typename E::const_iterator2::iterator_category>::storage_category storage_category;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:172:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_assign, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>>' requested here
172 | matrix_assign<scalar_assign> (*this, ae);
| ^
rsides.cpp:1812:34: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix<double>::matrix<boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix_unary2<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::scalar_identity<double>>, boost::numeric::ublas::matrix<double>, double>>>' requested here
1812 | ublas::matrix<double> trxx = prod(trans(x), x);
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:4961:13: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>::const_iterator1, double>' requested here
4961 | public iterator_base_traits<typename iterator_restrict_traits<typename E1::const_iterator1::iterator_category,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1364:59: note: in instantiation of member class 'boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>::const_iterator1' requested here
1364 | typename E::const_iterator1::iterator_category,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:172:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_assign, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>>' requested here
172 | matrix_assign<scalar_assign> (*this, ae);
| ^
rsides.cpp:1817:33: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix<double>::matrix<boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>>' requested here
1817 | ublas::matrix<double> est = prod(trxx_inv, txy);
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from rsides.cpp:22:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:18:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/vector.hpp:21:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/storage.hpp:27:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/traits.hpp:21:
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix_expression.hpp:5223:13: note: in instantiation of template class 'boost::numeric::ublas::random_access_iterator_base<boost::numeric::ublas::dense_random_access_iterator_tag, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>::const_iterator2, double>' requested here
5223 | public iterator_base_traits<typename iterator_restrict_traits<typename E1::const_iterator1::iterator_category,
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/detail/matrix_assign.hpp:1365:59: note: in instantiation of member class 'boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>::const_iterator2' requested here
1365 | typename E::const_iterator2::iterator_category>::storage_category storage_category;
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/numeric/ublas/matrix.hpp:172:13: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix_assign<boost::numeric::ublas::scalar_assign, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>>' requested here
172 | matrix_assign<scalar_assign> (*this, ae);
| ^
rsides.cpp:1817:33: note: in instantiation of function template specialization 'boost::numeric::ublas::matrix<double>::matrix<boost::numeric::ublas::matrix_matrix_binary<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix_matrix_prod<boost::numeric::ublas::matrix<double>, boost::numeric::ublas::matrix<double>, double>>>' requested here
1817 | ublas::matrix<double> est = prod(trxx_inv, txy);
| ^
/usr/local/clang19/bin/../include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:723:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
723 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/local/clang19/bin/../include/c++/v1/__config:688:49: note: expanded from macro '_LIBCPP_DEPRECATED'
688 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
31 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o rsides.so RcppExports.o rsides.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rsides/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rsides/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rsides/src'
installing to /data/gannet/ripley/R/packages/tests-clang/rsides.Rcheck/00LOCK-rsides/00new/rsides/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rsides)