* installing *source* package ‘robCompositions’ ...
** package ‘robCompositions’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.5’
using C++ compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/robCompositions/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c bspline.cpp -o bspline.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c classData.cpp -o classData.o
In file included from classData.cpp:10:
In file included from ./density_estimation.h:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from classData.cpp:10:
In file included from ./density_estimation.h:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c cuore.cpp -o cuore.o
3 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c density_estimation.cpp -o density_estimation.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c gauss_points_weights.cpp -o gauss_points_weights.o
In file included from cuore.cpp:1:
In file included from ./density_estimation.h:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from cuore.cpp:1:
In file included from ./density_estimation.h:5:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from cuore.cpp:10:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from cuore.cpp:10:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
cuore.cpp:235:7: warning: unused variable 'barWidth' [-Wunused-variable]
235 | int barWidth = 70; // for bar progress plot
| ^~~~~~~~
cuore.cpp:236:7: warning: unused variable 'count' [-Wunused-variable]
236 | int count = 0;
| ^~~~~
cuore.cpp:237:7: warning: unused variable 'pos' [-Wunused-variable]
237 | int pos = 0;
| ^~~
In file included from density_estimation.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from density_estimation.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
8 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c robCompositions.c -o robCompositions.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c robCompositions_init.c -o robCompositions_init.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c sandia_rules.cpp -o sandia_rules.o
3 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c zeros.cpp -o zeros.o
sandia_rules.cpp:6030:17: warning: unused variable 'sqrtpi' [-Wunused-variable]
6030 | static double sqrtpi = 1.7724538509055159;
| ^~~~~~
sandia_rules.cpp:7009:7: warning: unused variable 'j' [-Wunused-variable]
7009 | int j;
| ^
sandia_rules.cpp:11501:10: warning: variable 'cc' set but not used [-Wunused-but-set-variable]
11501 | double cc;
| ^
sandia_rules.cpp:13834:10: warning: variable 'fx' set but not used [-Wunused-but-set-variable]
13834 | double fx;
| ^
sandia_rules.cpp:16460:7: warning: unused variable 'i' [-Wunused-variable]
16460 | int i;
| ^
sandia_rules.cpp:16556:7: warning: unused variable 'i' [-Wunused-variable]
16556 | int i;
| ^
sandia_rules.cpp:19283:7: warning: unused variable 'j' [-Wunused-variable]
19283 | int j;
| ^
sandia_rules.cpp:19444:7: warning: unused variable 'j' [-Wunused-variable]
19444 | int j;
| ^
sandia_rules.cpp:19449:7: warning: unused variable 'k1' [-Wunused-variable]
19449 | int k1;
| ^~
sandia_rules.cpp:19812:7: warning: unused variable 'j' [-Wunused-variable]
19812 | int j;
| ^
sandia_rules.cpp:19998:7: warning: unused variable 'j' [-Wunused-variable]
19998 | int j;
| ^
sandia_rules.cpp:20003:7: warning: unused variable 'k1' [-Wunused-variable]
20003 | int k1;
| ^~
sandia_rules.cpp:21619:17: warning: variable 'k' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
21619 | else if ( m < 0 )
| ^~~~~
sandia_rules.cpp:21747:14: note: uninitialized use occurs here
21747 | if ( 120 < k )
| ^
sandia_rules.cpp:21619:12: note: remove the 'if' if its condition is always true
21619 | else if ( m < 0 )
| ^~~~~~~~~~~~
21620 | {
sandia_rules.cpp:21385:8: note: initialize the variable 'k' to silence this warning
21385 | int k;
| ^
| = 0
sandia_rules.cpp:25625:10: warning: variable 'len' set but not used [-Wunused-but-set-variable]
25625 | size_t len;
| ^
zeros.cpp:110:10: warning: variable 't_tot' set but not used [-Wunused-but-set-variable]
110 | double t_tot = 0.0;
| ^
1 warning generated.
14 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o robCompositions.so bspline.o classData.o cuore.o density_estimation.o gauss_points_weights.o robCompositions.o robCompositions_init.o sandia_rules.o zeros.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/robCompositions/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/robCompositions/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/robCompositions/src'
installing to /data/gannet/ripley/R/packages/tests-clang/robCompositions.Rcheck/00LOCK-robCompositions/00new/robCompositions/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (robCompositions)