* installing *source* package ‘rgenoud’ ...
** this is package ‘rgenoud’ version ‘5.9-0.11’
** package ‘rgenoud’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.7’
using C++ compiler: ‘clang version 19.1.7’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rgenoud/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c change_order.cpp -o change_order.o
In file included from change_order.cpp:20:
./genoud.h:18:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
18 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c eval.cpp -o eval.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c evaluate.cpp -o evaluate.o
In file included from evaluate.cpp:17:
./genoud.h:18:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
18 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from eval.cpp:23:
./genoud.h:18:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
18 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c frange_ran.cpp -o frange_ran.o
evaluate.cpp:4056:8: warning: variable 'nvars' set but not used [-Wunused-but-set-variable]
4056 | long nvars;
| ^
evaluate.cpp:4093:8: warning: variable 'nvars' set but not used [-Wunused-but-set-variable]
4093 | long nvars;
| ^
In file included from frange_ran.cpp:19:
./genoud.h:18:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
18 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c genoud.cpp -o genoud.o
3 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c gradient.cpp -o gradient.o
In file included from gradient.cpp:19:
./genoud.h:18:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
18 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
gradient.cpp:208:10: warning: variable 'u' set but not used [-Wunused-but-set-variable]
208 | double u, fplus, fminus;
| ^
gradient.cpp:209:10: warning: variable 'epsuse' set but not used [-Wunused-but-set-variable]
209 | double epsuse;
| ^
gradient.cpp:405:3: warning: unused label 'FD1' [-Wunused-label]
405 | FD1:
| ^~~~
gradient.cpp:413:3: warning: unused label 'FD2' [-Wunused-label]
413 | FD2:
| ^~~~
gradient.cpp:420:3: warning: unused label 'FD3' [-Wunused-label]
420 | FD3:
| ^~~~
6 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c math.cpp -o math.o
In file included from math.cpp:19:
./genoud.h:18:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
18 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c multiply.cpp -o multiply.o
In file included from multiply.cpp:19:
./genoud.h:18:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
18 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from genoud.cpp:18:
./genoud.h:18:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
18 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
genoud.cpp:66:8: warning: variable 'LVMreturn' set but not used [-Wunused-but-set-variable]
66 | long LVMreturn;
| ^
2 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c numerics.cpp -o numerics.o
In file included from numerics.cpp:19:
./genoud.h:18:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
18 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c operators.cpp -o operators.o
In file included from operators.cpp:19:
./genoud.h:18:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
18 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c print_format.cpp -o print_format.o
In file included from print_format.cpp:18:
./genoud.h:18:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
18 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c rgenoud.cpp -o rgenoud.o
In file included from rgenoud.cpp:18:
./genoud.h:18:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
18 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
print_format.cpp:34:19: warning: variable 'fint' set but not used [-Wunused-but-set-variable]
34 | int i, j, ltmp, fint;
| ^
2 warnings generated.
rgenoud.cpp:143:9: warning: variable 'StartingValues' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
143 | if (nStartingValues > 0) {
| ^~~~~~~~~~~~~~~~~~~
rgenoud.cpp:167:35: note: uninitialized use occurs here
167 | MainStructure->StartingValues=StartingValues;
| ^~~~~~~~~~~~~~
rgenoud.cpp:143:5: note: remove the 'if' if its condition is always true
143 | if (nStartingValues > 0) {
| ^~~~~~~~~~~~~~~~~~~~~~~~
rgenoud.cpp:140:28: note: initialize the variable 'StartingValues' to silence this warning
140 | double **StartingValues;
| ^
| = nullptr
2 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o rgenoud.so change_order.o eval.o evaluate.o frange_ran.o genoud.o gradient.o init.o math.o multiply.o numerics.o operators.o print_format.o rgenoud.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rgenoud/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rgenoud/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rgenoud/src'
installing to /data/gannet/ripley/R/packages/tests-clang/rgenoud.Rcheck/00LOCK-rgenoud/00new/rgenoud/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rgenoud)