* installing *source* package ‘redatam’ ...
** package ‘redatam’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.2’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/redatam/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c vendor/pugixml.cpp -o vendor/pugixml.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c redatamlib/BitArrayReader.cpp -o redatamlib/BitArrayReader.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c redatamlib/ByteArrayReader.cpp -o redatamlib/ByteArrayReader.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c redatamlib/Entity.cpp -o redatamlib/Entity.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c redatamlib/FuzzyEntityParser.cpp -o redatamlib/FuzzyEntityParser.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c redatamlib/FuzzyVariableParser.cpp -o redatamlib/FuzzyVariableParser.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c redatamlib/ParentIDCalculator.cpp -o redatamlib/ParentIDCalculator.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c redatamlib/RListExporter.cpp -o redatamlib/RListExporter.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c redatamlib/RedatamDatabase.cpp -o redatamlib/RedatamDatabase.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c redatamlib/Variable.cpp -o redatamlib/Variable.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c redatamlib/XMLParser.cpp -o redatamlib/XMLParser.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c redatamlib/utils.cpp -o redatamlib/utils.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c main.cpp -o main.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c cpp11.cpp -o cpp11.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o redatam.so vendor/pugixml.o redatamlib/BitArrayReader.o redatamlib/ByteArrayReader.o redatamlib/Entity.o redatamlib/FuzzyEntityParser.o redatamlib/FuzzyVariableParser.o redatamlib/ParentIDCalculator.o redatamlib/RListExporter.o redatamlib/RedatamDatabase.o redatamlib/Variable.o redatamlib/XMLParser.o redatamlib/utils.o main.o cpp11.o -Lvendor -Lredatamlib
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/redatam/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/redatam/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/redatam/src'
installing to /data/gannet/ripley/R/packages/tests-clang/redatam.Rcheck/00LOCK-redatam/00new/redatam/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (redatam)