* installing *source* package ‘redatam’ ...
** this is package ‘redatam’ version ‘2.1.1’
** package ‘redatam’ successfully unpacked and MD5 sums checked
** using staged installation
Please specify at least one package name on the command line.
Please specify at least one package name on the command line.
** libs
using C++ compiler: ‘clang version 20.1.0-rc2’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/redatam/src'
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c vendor/pugixml.cpp -o vendor/pugixml.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c redatamlib/readers/BitArrayReader.cpp -o redatamlib/readers/BitArrayReader.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c redatamlib/readers/ByteArrayReader.cpp -o redatamlib/readers/ByteArrayReader.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c redatamlib/entities/Entity.cpp -o redatamlib/entities/Entity.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c redatamlib/readers/FuzzyEntityParser.cpp -o redatamlib/readers/FuzzyEntityParser.o
In file included from redatamlib/readers/FuzzyEntityParser.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/function.hpp:9:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from redatamlib/readers/FuzzyEntityParser.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/function.hpp:11:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c redatamlib/readers/FuzzyVariableParser.cpp -o redatamlib/readers/FuzzyVariableParser.o
In file included from redatamlib/readers/FuzzyVariableParser.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/function.hpp:9:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from redatamlib/readers/FuzzyVariableParser.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/function.hpp:11:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c redatamlib/exporters/ParentIDCalculator.cpp -o redatamlib/exporters/ParentIDCalculator.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c redatamlib/exporters/RListExporter.cpp -o redatamlib/exporters/RListExporter.o
In file included from redatamlib/exporters/RListExporter.cpp:1:
In file included from redatamlib/exporters/RListExporter.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/doubles.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from redatamlib/exporters/RListExporter.cpp:1:
In file included from redatamlib/exporters/RListExporter.hpp:8:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/doubles.hpp:11:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c redatamlib/entities/Variable.cpp -o redatamlib/entities/Variable.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c redatamlib/readers/XMLParser.cpp -o redatamlib/readers/XMLParser.o
In file included from redatamlib/readers/XMLParser.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/function.hpp:9:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from redatamlib/readers/XMLParser.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/function.hpp:11:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c redatamlib/utils/utils.cpp -o redatamlib/utils/utils.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c redatamlib/database/RedatamDatabase.cpp -o redatamlib/database/RedatamDatabase.o
In file included from redatamlib/database/RedatamDatabase.cpp:1:
In file included from redatamlib/database/RedatamDatabase.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:5:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from redatamlib/database/RedatamDatabase.cpp:1:
In file included from redatamlib/database/RedatamDatabase.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c main.cpp -o main.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c cpp11.cpp -o cpp11.o
In file included from cpp11.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/declarations.hpp:13:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:3:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from cpp11.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/declarations.hpp:13:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
In file included from main.cpp:1:
In file included from redatamlib/database/RedatamDatabase.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:5:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
| ~~~~~~~~~~~^~~
| operator""_xl
In file included from main.cpp:1:
In file included from redatamlib/database/RedatamDatabase.hpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
| ~~~~~~~~~~~^~~
| operator""_nm
2 warnings generated.
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o redatam.so vendor/pugixml.o redatamlib/readers/BitArrayReader.o redatamlib/readers/ByteArrayReader.o redatamlib/entities/Entity.o redatamlib/readers/FuzzyEntityParser.o redatamlib/readers/FuzzyVariableParser.o redatamlib/exporters/ParentIDCalculator.o redatamlib/exporters/RListExporter.o redatamlib/entities/Variable.o redatamlib/readers/XMLParser.o redatamlib/utils/utils.o redatamlib/database/RedatamDatabase.o main.o cpp11.o -Lvendor -Lredatamlib
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/redatam/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/redatam/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/redatam/src'
installing to /data/gannet/ripley/R/packages/tests-clang/redatam.Rcheck/00LOCK-redatam/00new/redatam/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (redatam)