• using R Under development (unstable) (2025-02-19 r87749)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 20.1.0-rc2     flang version 20.1.0-rc2
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘rbmi/DESCRIPTION’ ... OK
• this is package ‘rbmi’ version ‘1.4.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘rbmi’ can be installed ... [16s/22s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [23s/33s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [181s/341s] ERROR   Running ‘testthat.R’ [180s/340s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(rbmi)   >   > test_check("rbmi")   0,248,Js_of_ocaml__Js.Error,18,TypeError: not a function   mmrm() registered as emmeans extension   0,248,Js_of_ocaml__Js.Error,18,TypeError: not a function   0,248,Js_of_ocaml__Js.Error,18,TypeError: not a function   0,248,Js_of_ocaml__Js.Error,18,TypeError: not a function   [ FAIL 4 | WARN 0 | SKIP 15 | PASS 1261 ]      ══ Skipped tests (15) ══════════════════════════════════════════════════════════   • On CRAN (1): 'test-mmrm.R:337:5'   • is_full_test() is not TRUE (14): 'test-draws.R:115:5',     'test-fullusage.R:43:5', 'test-fullusage.R:117:5', 'test-fullusage.R:209:5',     'test-fullusage.R:300:5', 'test-fullusage.R:431:5', 'test-fullusage.R:520:5',     'test-fullusage.R:675:5', 'test-mcmc.R:327:5', 'test-mcmc.R:504:5',     'test-mcmc.R:635:5', 'test-parallel.R:8:5', 'test-reproducibility.R:9:5',     'test-reproducibility.R:135:5'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-draws.R:144:9'): bayes ─────────────────────────────────────────   Error in `model_cppcode$errors`: $ operator is invalid for atomic vectors   Backtrace:       ▆    1. ├─base::suppressWarnings(...) at test-draws.R:143:5    2. │ └─base::withCallingHandlers(...)    3. ├─rbmi::draws(d$dat, d$dat_ice, d$vars, meth, quiet = TRUE) at test-draws.R:144:9    4. └─rbmi:::draws.bayes(d$dat, d$dat_ice, d$vars, meth, quiet = TRUE)    5. └─rbmi:::fit_mcmc(...)    6. └─rbmi:::get_stan_model()    7. └─rstan::stan_model(file = model_file, auto_write = TRUE, model_name = "rbmi_mmrm")    8. └─rstan::stanc(...)   ── Error ('test-mcmc.R:108:13'): Verbose suppression works ─────────────────────   Error in `model_cppcode$errors`: $ operator is invalid for atomic vectors   Backtrace:        ▆     1. ├─base::suppressWarnings(...) at test-mcmc.R:106:5     2. │ └─base::withCallingHandlers(...)     3. ├─utils::capture.output(...) at test-mcmc.R:107:9     4. │ └─base::withVisible(...elt(i))     5. ├─rbmi::draws(...) at test-mcmc.R:108:13     6. └─rbmi:::draws.bayes(...)     7. └─rbmi:::fit_mcmc(...)     8. └─rbmi:::get_stan_model()     9. └─rstan::stan_model(file = model_file, auto_write = TRUE, model_name = "rbmi_mmrm")    10. └─rstan::stanc(...)   ── Error ('test-print.R:102:9'): print - bayesian ──────────────────────────────   Error in `model_cppcode$errors`: $ operator is invalid for atomic vectors   Backtrace:       ▆    1. ├─base::suppressWarnings(...) at test-print.R:101:5    2. │ └─base::withCallingHandlers(...)    3. ├─rbmi::draws(...) at test-print.R:102:9    4. └─rbmi:::draws.bayes(...)    5. └─rbmi:::fit_mcmc(...)    6. └─rbmi:::get_stan_model()    7. └─rstan::stan_model(file = model_file, auto_write = TRUE, model_name = "rbmi_mmrm")    8. └─rstan::stanc(...)   ── Error ('test-reproducibility.R:123:9'): bayes - set.seed produces identical results ──   Error in `model_cppcode$errors`: $ operator is invalid for atomic vectors   Backtrace:       ▆    1. ├─base::suppressWarnings(...) at test-reproducibility.R:122:5    2. │ └─base::withCallingHandlers(...)    3. ├─rbmi::draws(dat, dat_ice, vars, meth, quiet = TRUE) at test-reproducibility.R:123:9    4. └─rbmi:::draws.bayes(dat, dat_ice, vars, meth, quiet = TRUE)    5. └─rbmi:::fit_mcmc(...)    6. └─rbmi:::get_stan_model()    7. └─rstan::stan_model(file = model_file, auto_write = TRUE, model_name = "rbmi_mmrm")    8. └─rstan::stanc(...)      [ FAIL 4 | WARN 0 | SKIP 15 | PASS 1261 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... OK
• checking PDF version of manual ... [18s/27s] OK
• checking HTML version of manual ... [9s/15s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR