* installing *source* package ‘rbm25’ ... ** this is package ‘rbm25’ version ‘0.0.3’ ** package ‘rbm25’ successfully unpacked and MD5 sums checked ** using staged installation Using cargo 1.84.0 (66221abde 2024-11-19) Using rustc 1.84.0 (9fc6b4312 2025-01-07) ** libs using C compiler: ‘clang version 19.1.6’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rbm25/src' rm -Rf rbm25.so ./rust/target/release/librbm25.a entrypoint.o /data/gannet/ripley/R/packages/tests-clang/rbm25/src/.cargo /data/gannet/ripley/R/packages/tests-clang/rbm25/src/vendor /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c entrypoint.c -o entrypoint.o if [ -f ./rust/vendor.tar.xz ]; then \ tar xf rust/vendor.tar.xz && \ mkdir -p /data/gannet/ripley/R/packages/tests-clang/rbm25/src/.cargo && \ cp rust/vendor-config.toml /data/gannet/ripley/R/packages/tests-clang/rbm25/src/.cargo/config.toml; \ fi # In some environments, ~/.cargo/bin might not be included in PATH, so we need # to set it here to ensure cargo can be invoked. It is appended to PATH and # therefore is only used if cargo is absent from the user's PATH. if [ "" != "true" ]; then \ export CARGO_HOME=/data/gannet/ripley/R/packages/tests-clang/rbm25/src/.cargo; \ fi && \ export PATH="/usr/local/clang/bin:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin" && \ cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target && \ echo `cargo --version` && echo `rustc --version`; Compiling proc-macro2 v1.0.92 Compiling unicode-ident v1.0.14 Compiling serde_json v1.0.135 Compiling serde v1.0.217 Compiling version_check v0.9.5 Compiling quote v1.0.38 Compiling syn v2.0.96 Compiling strsim v0.11.1 Compiling fnv v1.0.7 Compiling ident_case v1.0.1 Compiling ahash v0.8.11 Compiling darling_core v0.20.10 Compiling memchr v2.7.4 Compiling once_cell v1.20.2 Compiling ryu v1.0.18 Compiling itoa v1.0.14 Compiling darling_macro v0.20.10 Compiling zerocopy v0.7.35 Compiling thiserror v1.0.69 Compiling cfg-if v1.0.0 Compiling libR-sys v0.7.1 Compiling darling v0.20.10 Compiling stop-words v0.8.1 Compiling thiserror-impl v1.0.69 Compiling paste v1.0.15 Compiling allocator-api2 v0.2.21 Compiling hashbrown v0.14.5 Compiling cached_proc_macro v0.23.0 Compiling serde_derive v1.0.217 Compiling cached_proc_macro_types v0.1.1 Compiling web-time v1.1.0 Compiling byteorder v1.5.0 Compiling extendr-api v0.7.1 Compiling fxhash v0.2.1 Compiling cached v0.53.1 Compiling extendr-macros v0.7.1 Compiling rust-stemmers v1.2.0 Compiling whichlang v0.1.0 Compiling bm25 v0.3.1 Compiling rbm25 v0.1.0 (/data/gannet/ripley/R/packages/tests-clang/rbm25/src/rust) Finished `release` profile [optimized] target(s) in 41.37s cargo 1.84.0 (66221abde 2024-11-19) rustc 1.84.0 (9fc6b4312 2025-01-07) rm -Rf /data/gannet/ripley/R/packages/tests-clang/rbm25/src/.cargo /data/gannet/ripley/R/packages/tests-clang/rbm25/src/vendor ./rust/target/release/build; \ /usr/local/clang19/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o rbm25.so entrypoint.o -L./rust/target/release -lrbm25 make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rbm25/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rbm25/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rbm25/src' installing to /data/gannet/ripley/R/packages/tests-clang/rbm25.Rcheck/00LOCK-rbm25/00new/rbm25/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rbm25)