Install log for 'profoc'

* installing *source* package ‘profoc’ ...
** package ‘profoc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.3’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/profoc/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/splines2/include' -I'/data/gannet/ripley/R/test-clang/rcpptimer/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp  -I../inst/include -I../inst/include/optim  -DRCPP_ARMADILLO_FIX_Field -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/splines2/include' -I'/data/gannet/ripley/R/test-clang/rcpptimer/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp  -I../inst/include -I../inst/include/optim  -DRCPP_ARMADILLO_FIX_Field -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c batch.cpp -o batch.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/splines2/include' -I'/data/gannet/ripley/R/test-clang/rcpptimer/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp  -I../inst/include -I../inst/include/optim  -DRCPP_ARMADILLO_FIX_Field -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c conline.cpp -o conline.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/splines2/include' -I'/data/gannet/ripley/R/test-clang/rcpptimer/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp  -I../inst/include -I../inst/include/optim  -DRCPP_ARMADILLO_FIX_Field -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c conline_exports.cpp -o conline_exports.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/splines2/include' -I'/data/gannet/ripley/R/test-clang/rcpptimer/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp  -I../inst/include -I../inst/include/optim  -DRCPP_ARMADILLO_FIX_Field -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c loss.cpp -o loss.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/splines2/include' -I'/data/gannet/ripley/R/test-clang/rcpptimer/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp  -I../inst/include -I../inst/include/optim  -DRCPP_ARMADILLO_FIX_Field -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c misc.cpp -o misc.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/splines2/include' -I'/data/gannet/ripley/R/test-clang/rcpptimer/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp  -I../inst/include -I../inst/include/optim  -DRCPP_ARMADILLO_FIX_Field -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c oracle.cpp -o oracle.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/splines2/include' -I'/data/gannet/ripley/R/test-clang/rcpptimer/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp  -I../inst/include -I../inst/include/optim  -DRCPP_ARMADILLO_FIX_Field -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c profoc_types.cpp -o profoc_types.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/splines2/include' -I'/data/gannet/ripley/R/test-clang/rcpptimer/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -fopenmp  -I../inst/include -I../inst/include/optim  -DRCPP_ARMADILLO_FIX_Field -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c splines.cpp -o splines.o
In file included from oracle.cpp:9:
In file included from ../inst/include/optim/optim.hpp:44:
../inst/include/optim/unconstrained/bfgs.hpp:105:15: warning: unused variable 'print_level' [-Wunused-variable]
  105 |     const int print_level = settings.print_level;
      |               ^~~~~~~~~~~
In file included from oracle.cpp:9:
In file included from ../inst/include/optim/optim.hpp:45:
../inst/include/optim/unconstrained/lbfgs.hpp:141:15: warning: unused variable 'print_level' [-Wunused-variable]
  141 |     const int print_level = settings.print_level;
      |               ^~~~~~~~~~~
In file included from oracle.cpp:9:
In file included from ../inst/include/optim/optim.hpp:46:
../inst/include/optim/unconstrained/newton.hpp:106:15: warning: unused variable 'print_level' [-Wunused-variable]
  106 |     const int print_level = settings.print_level;
      |               ^~~~~~~~~~~
In file included from oracle.cpp:9:
In file included from ../inst/include/optim/optim.hpp:47:
../inst/include/optim/unconstrained/cg.hpp:195:15: warning: unused variable 'print_level' [-Wunused-variable]
  195 |     const int print_level = settings.print_level;
      |               ^~~~~~~~~~~
In file included from oracle.cpp:9:
In file included from ../inst/include/optim/optim.hpp:48:
../inst/include/optim/unconstrained/gd.hpp:107:15: warning: unused variable 'print_level' [-Wunused-variable]
  107 |     const int print_level = settings.print_level;
      |               ^~~~~~~~~~~
In file included from oracle.cpp:9:
In file included from ../inst/include/optim/optim.hpp:49:
../inst/include/optim/unconstrained/de.hpp:102:15: warning: unused variable 'print_level' [-Wunused-variable]
  102 |     const int print_level = settings.print_level;
      |               ^~~~~~~~~~~
In file included from oracle.cpp:9:
In file included from ../inst/include/optim/optim.hpp:50:
../inst/include/optim/unconstrained/de_prmm.hpp:103:15: warning: unused variable 'print_level' [-Wunused-variable]
  103 |     const int print_level = settings.print_level;
      |               ^~~~~~~~~~~
In file included from oracle.cpp:9:
In file included from ../inst/include/optim/optim.hpp:51:
../inst/include/optim/unconstrained/nm.hpp:169:12: warning: variable 'min_val' set but not used [-Wunused-but-set-variable]
  169 |     double min_val = OPTIM_MATOPS_MIN_VAL(simplex_fn_vals);
      |            ^
In file included from oracle.cpp:9:
In file included from ../inst/include/optim/optim.hpp:52:
../inst/include/optim/unconstrained/pso.hpp:103:15: warning: unused variable 'print_level' [-Wunused-variable]
  103 |     const int print_level = settings.print_level;
      |               ^~~~~~~~~~~
In file included from oracle.cpp:9:
In file included from ../inst/include/optim/optim.hpp:53:
../inst/include/optim/unconstrained/pso_dv.hpp:103:15: warning: unused variable 'print_level' [-Wunused-variable]
  103 |     const int print_level = settings.print_level;
      |               ^~~~~~~~~~~
In file included from oracle.cpp:9:
In file included from ../inst/include/optim/optim.hpp:59:
../inst/include/optim/zeros/broyden.hpp:164:15: warning: unused variable 'print_level' [-Wunused-variable]
  164 |     const int print_level = settings.print_level;
      |               ^~~~~~~~~~~
../inst/include/optim/zeros/broyden.hpp:302:15: warning: unused variable 'print_level' [-Wunused-variable]
  302 |     const int print_level = settings.print_level;
      |               ^~~~~~~~~~~
In file included from oracle.cpp:9:
In file included from ../inst/include/optim/optim.hpp:60:
../inst/include/optim/zeros/broyden_df.hpp:217:15: warning: unused variable 'print_level' [-Wunused-variable]
  217 |     const int print_level = settings.print_level;
      |               ^~~~~~~~~~~
../inst/include/optim/zeros/broyden_df.hpp:390:15: warning: unused variable 'print_level' [-Wunused-variable]
  390 |     const int print_level = settings.print_level;
      |               ^~~~~~~~~~~
14 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o profoc.so RcppExports.o batch.o conline.o conline_exports.o loss.o misc.o oracle.o profoc_types.o splines.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/profoc/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/profoc/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/profoc/src'
installing to /data/gannet/ripley/R/packages/tests-clang/profoc.Rcheck/00LOCK-profoc/00new/profoc/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (profoc)