* installing *source* package ‘prioriactions’ ... ** package ‘prioriactions’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 19.1.3’ using C++ compiler: ‘clang version 19.1.3’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/prioriactions/src' /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c OptimizationProblem.cpp -o OptimizationProblem.o In file included from OptimizationProblem.cpp:1: In file included from ./OptimizationProblem.h:5: In file included from ./Package.h:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/functional/hash.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/hash.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/is_contiguous_range.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48: /data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined] 98 | # define BOOST_NO_AUTO_PTR | ^ <command line>:4:9: note: previous definition is here 4 | #define BOOST_NO_AUTO_PTR 1 | ^ In file included from OptimizationProblem.cpp:1: In file included from ./OptimizationProblem.h:5: In file included from ./Package.h:35: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 29 | #define R_NO_REMAP | ^ <command line>:5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 2 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c functions.cpp -o functions.o In file included from functions.cpp:1: In file included from ./functions.h:5: In file included from ./Package.h:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/functional/hash.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/hash.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/is_contiguous_range.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48: /data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined] 98 | # define BOOST_NO_AUTO_PTR | ^ <command line>:4:9: note: previous definition is here 4 | #define BOOST_NO_AUTO_PTR 1 | ^ In file included from functions.cpp:1: In file included from ./functions.h:5: In file included from ./Package.h:35: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 29 | #define R_NO_REMAP | ^ <command line>:5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 2 warnings generated. /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rcpp_constraint_activation.cpp -o rcpp_constraint_activation.o In file included from rcpp_constraint_activation.cpp:1: In file included from ./Package.h:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/functional/hash.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/hash.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/is_contiguous_range.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48: /data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined] 98 | # define BOOST_NO_AUTO_PTR | ^ <command line>:4:9: note: previous definition is here 4 | #define BOOST_NO_AUTO_PTR 1 | ^ In file included from rcpp_constraint_activation.cpp:1: In file included from ./Package.h:35: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 29 | #define R_NO_REMAP | ^ <command line>:5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 2 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rcpp_constraint_benefit.cpp -o rcpp_constraint_benefit.o In file included from rcpp_constraint_benefit.cpp:1: In file included from ./Package.h:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/functional/hash.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/hash.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/is_contiguous_range.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48: /data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined] 98 | # define BOOST_NO_AUTO_PTR | ^ <command line>:4:9: note: previous definition is here 4 | #define BOOST_NO_AUTO_PTR 1 | ^ In file included from rcpp_constraint_benefit.cpp:1: In file included from ./Package.h:35: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 29 | #define R_NO_REMAP | ^ <command line>:5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 2 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rcpp_constraint_budget.cpp -o rcpp_constraint_budget.o In file included from rcpp_constraint_budget.cpp:1: In file included from ./Package.h:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/functional/hash.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/hash.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/is_contiguous_range.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48: /data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined] 98 | # define BOOST_NO_AUTO_PTR | ^ <command line>:4:9: note: previous definition is here 4 | #define BOOST_NO_AUTO_PTR 1 | ^ In file included from rcpp_constraint_budget.cpp:1: In file included from ./Package.h:35: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 29 | #define R_NO_REMAP | ^ <command line>:5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 2 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rcpp_constraint_lock.cpp -o rcpp_constraint_lock.o In file included from rcpp_constraint_lock.cpp:1: In file included from ./Package.h:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/functional/hash.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/hash.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/is_contiguous_range.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48: /data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined] 98 | # define BOOST_NO_AUTO_PTR | ^ <command line>:4:9: note: previous definition is here 4 | #define BOOST_NO_AUTO_PTR 1 | ^ In file included from rcpp_constraint_lock.cpp:1: In file included from ./Package.h:35: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 29 | #define R_NO_REMAP | ^ <command line>:5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 2 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rcpp_constraint_target.cpp -o rcpp_constraint_target.o In file included from rcpp_constraint_target.cpp:1: In file included from ./Package.h:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/functional/hash.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/hash.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/is_contiguous_range.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48: /data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined] 98 | # define BOOST_NO_AUTO_PTR | ^ <command line>:4:9: note: previous definition is here 4 | #define BOOST_NO_AUTO_PTR 1 | ^ In file included from rcpp_constraint_target.cpp:1: In file included from ./Package.h:35: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 29 | #define R_NO_REMAP | ^ <command line>:5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 2 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rcpp_objective_max_coverage.cpp -o rcpp_objective_max_coverage.o In file included from rcpp_objective_max_coverage.cpp:1: In file included from ./Package.h:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/functional/hash.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/hash.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/is_contiguous_range.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48: /data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined] 98 | # define BOOST_NO_AUTO_PTR | ^ <command line>:4:9: note: previous definition is here 4 | #define BOOST_NO_AUTO_PTR 1 | ^ In file included from rcpp_objective_max_coverage.cpp:1: In file included from ./Package.h:35: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 29 | #define R_NO_REMAP | ^ <command line>:5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 2 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rcpp_objective_min_set.cpp -o rcpp_objective_min_set.o In file included from rcpp_objective_min_set.cpp:1: In file included from ./Package.h:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/functional/hash.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/hash.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/is_contiguous_range.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48: /data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined] 98 | # define BOOST_NO_AUTO_PTR | ^ <command line>:4:9: note: previous definition is here 4 | #define BOOST_NO_AUTO_PTR 1 | ^ In file included from rcpp_objective_min_set.cpp:1: In file included from ./Package.h:35: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 29 | #define R_NO_REMAP | ^ <command line>:5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 2 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rcpp_stats_benefit.cpp -o rcpp_stats_benefit.o In file included from rcpp_stats_benefit.cpp:1: In file included from ./Package.h:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/functional/hash.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/hash.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/is_contiguous_range.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48: /data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined] 98 | # define BOOST_NO_AUTO_PTR | ^ <command line>:4:9: note: previous definition is here 4 | #define BOOST_NO_AUTO_PTR 1 | ^ In file included from rcpp_stats_benefit.cpp:1: In file included from ./Package.h:35: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 29 | #define R_NO_REMAP | ^ <command line>:5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 2 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rcpp_stats_connectivity_actions.cpp -o rcpp_stats_connectivity_actions.o In file included from rcpp_stats_connectivity_actions.cpp:1: In file included from ./Package.h:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/functional/hash.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/hash.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/is_contiguous_range.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48: /data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined] 98 | # define BOOST_NO_AUTO_PTR | ^ <command line>:4:9: note: previous definition is here 4 | #define BOOST_NO_AUTO_PTR 1 | ^ In file included from rcpp_stats_connectivity_actions.cpp:1: In file included from ./Package.h:35: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 29 | #define R_NO_REMAP | ^ <command line>:5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 2 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rcpp_stats_connectivity_units.cpp -o rcpp_stats_connectivity_units.o In file included from rcpp_stats_connectivity_units.cpp:1: In file included from ./Package.h:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/functional/hash.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/hash.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/is_contiguous_range.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48: /data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined] 98 | # define BOOST_NO_AUTO_PTR | ^ <command line>:4:9: note: previous definition is here 4 | #define BOOST_NO_AUTO_PTR 1 | ^ In file included from rcpp_stats_connectivity_units.cpp:1: In file included from ./Package.h:35: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 29 | #define R_NO_REMAP | ^ <command line>:5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 2 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rcpp_stats_costs_actions.cpp -o rcpp_stats_costs_actions.o In file included from rcpp_stats_costs_actions.cpp:1: In file included from ./Package.h:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/functional/hash.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/hash.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/is_contiguous_range.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48: /data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined] 98 | # define BOOST_NO_AUTO_PTR | ^ <command line>:4:9: note: previous definition is here 4 | #define BOOST_NO_AUTO_PTR 1 | ^ In file included from rcpp_stats_costs_actions.cpp:1: In file included from ./Package.h:35: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 29 | #define R_NO_REMAP | ^ <command line>:5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 2 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rcpp_stats_costs_units.cpp -o rcpp_stats_costs_units.o In file included from rcpp_stats_costs_units.cpp:1: In file included from ./Package.h:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/functional/hash.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/hash.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/is_contiguous_range.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48: /data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined] 98 | # define BOOST_NO_AUTO_PTR | ^ <command line>:4:9: note: previous definition is here 4 | #define BOOST_NO_AUTO_PTR 1 | ^ In file included from rcpp_stats_costs_units.cpp:1: In file included from ./Package.h:35: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 29 | #define R_NO_REMAP | ^ <command line>:5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 2 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c rcpp_stats_recovery.cpp -o rcpp_stats_recovery.o In file included from rcpp_stats_recovery.cpp:1: In file included from ./Package.h:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/functional/hash.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/hash.hpp:15: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/container_hash/is_contiguous_range.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/config.hpp:48: /data/gannet/ripley/R/test-clang/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined] 98 | # define BOOST_NO_AUTO_PTR | ^ <command line>:4:9: note: previous definition is here 4 | #define BOOST_NO_AUTO_PTR 1 | ^ In file included from rcpp_stats_recovery.cpp:1: In file included from ./Package.h:35: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 29 | #define R_NO_REMAP | ^ <command line>:5:9: note: previous definition is here 5 | #define R_NO_REMAP 1 | ^ 2 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o prioriactions.so OptimizationProblem.o RcppExports.o functions.o init.o rcpp_constraint_activation.o rcpp_constraint_benefit.o rcpp_constraint_budget.o rcpp_constraint_lock.o rcpp_constraint_target.o rcpp_objective_max_coverage.o rcpp_objective_min_set.o rcpp_stats_benefit.o rcpp_stats_connectivity_actions.o rcpp_stats_connectivity_units.o rcpp_stats_costs_actions.o rcpp_stats_costs_units.o rcpp_stats_recovery.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/prioriactions/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/prioriactions/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/prioriactions/src' installing to /data/gannet/ripley/R/packages/tests-clang/prioriactions.Rcheck/00LOCK-prioriactions/00new/prioriactions/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prioriactions)