• using R Under development (unstable) (2024-12-10 r87437)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 19.1.5     flang-new version 19.1.5
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘pcalg/DESCRIPTION’ ... OK
• this is package ‘pcalg’ version ‘2.7-12’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘pcalg’ can be installed ... [164s/129s] OK See the install log for details.
• used C compiler: ‘clang version 19.1.5’
• used C++ compiler: ‘clang version 19.1.5’
• checking installed package size ... INFO   installed size is 5.5Mb   sub-directories of 1Mb or more:     data 2.1Mb
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [73s/87s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... INFO Undeclared packages ‘combinat’, ‘unifDAG’ in Rd xrefs
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [49s/58s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [238s/293s] OK   Running ‘test_LINGAM.R’   Running ‘test_addBgKnowledge.R’   Running ‘test_adjustment.R’   Running ‘test_ages.R’   Running ‘test_amat2dag.R’   Running ‘test_arges.R’   Running ‘test_backdoor.R’ [14s/16s]   Comparing ‘test_backdoor.Rout’ to ‘test_backdoor.Rout.save’ ... OK   Running ‘test_bicscore.R’   Running ‘test_causalEffect.R’   Running ‘test_coercion.R’   Running ‘test_compareGraphs.R’   Running ‘test_dag2cpdag.R’   Running ‘test_dag2essgraph.R’   Running ‘test_displayAmat.R’   Running ‘test_dsep.R’   Running ‘test_dsepAM.R’   Running ‘test_dsepAMTest.R’   Running ‘test_fci.R’   Running ‘test_fciPlus.R’   Running ‘test_gSquareBin.R’   Running ‘test_gSquareDis.R’   Running ‘test_gac.R’   Running ‘test_getNextSet.R’   Running ‘test_gies.R’   Running ‘test_ida.R’ [18s/20s]   Running ‘test_idaFast.R’ [10s/11s]   Running ‘test_isValidGraph.R’   Running ‘test_jointIda.R’   Running ‘test_mat2targets.R’   Running ‘test_optAdjSet.R’   Running ‘test_opttarget.R’   Running ‘test_pag2anc.R’   Running ‘test_pag2conf.R’   Running ‘test_pag2edge.R’   Running ‘test_pc.R’   Running ‘test_pcSelect.R’   Running ‘test_pcalg2dagitty.R’   Running ‘test_pcorOrder.R’   Running ‘test_pdag2allDags.R’   Running ‘test_pdag2dag.R’   Running ‘test_possDeAn.R’   Running ‘test_randDAG.R’   Running ‘test_randomDAG.R’   Running ‘test_rfci.R’   Running ‘test_rmvDAG.R’   Running ‘test_searchAM.R’   Running ‘test_shd.R’   Running ‘test_skeleton.R’   Running ‘test_udag2pag.R’   Running ‘test_udag2pdag.R’ [11s/13s]   Running ‘test_wgtMatrix.R’
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [46s/57s] OK
• checking PDF version of manual ... [19s/25s] OK
• checking HTML version of manual ... [13s/22s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: OK