* installing *source* package ‘pbatR’ ...
** package ‘pbatR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.6’
using C++ compiler: ‘clang version 19.1.6’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pbatR/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c data.cpp -o data.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c fbatDist.cpp -o fbatDist.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c kludge.cpp -o kludge.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c pbatR_init.c -o pbatR_init.o
kludge.cpp:135:5: warning: variable 'index' is incremented both in the loop header and in the loop body [-Wfor-loop-analysis]
  135 |     index++;
      |     ^
kludge.cpp:125:28: note: incremented here
  125 |   for( index=0; index<len; index++ ) {
      |                            ^
kludge.cpp:16:11: warning: unused variable 'NUMREAD' [-Wunused-const-variable]
   16 | const int NUMREAD = 10;
      |           ^~~~~~~
2 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c powerSim.cpp -o powerSim.o
powerSim.cpp:36:11: warning: unused variable 'ASCERTAINMENT_NA' [-Wunused-const-variable]
   36 | const int ASCERTAINMENT_NA = 2;
      |           ^~~~~~~~~~~~~~~~
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c random.cpp -o random.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c sh2win.cpp -o sh2win.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw  -DR_NO_REMAP -c wait.cpp -o wait.o
wait.cpp:88:13: warning: unused variable 'sysRes' [-Wunused-variable]
   88 |         int sysRes = system( cmds[i].c_str() );
      |             ^~~~~~
wait.cpp:82:11: warning: variable 'pid' set but not used [-Wunused-but-set-variable]
   82 |       int pid = -999;
      |           ^
2 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o pbatR.so data.o fbatDist.o kludge.o pbatR_init.o powerSim.o random.o sh2win.o wait.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pbatR/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pbatR/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pbatR/src'
installing to /data/gannet/ripley/R/packages/tests-clang/pbatR.Rcheck/00LOCK-pbatR/00new/pbatR/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pbatR)