* installing *source* package ‘nnlib2Rcpp’ ...
** package ‘nnlib2Rcpp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/nnlib2Rcpp/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Rcpp_Autoencoder.cpp -o Rcpp_Autoencoder.o
In file included from Rcpp_Autoencoder.cpp:14:
In file included from ./nn_bp.h:19:
In file included from ./nn.h:19:
./connection_matrix.h:54:1: warning: extra ';' inside a class [-Wextra-semi]
54 | ;
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Rcpp_BP_supervised_module.cpp -o Rcpp_BP_supervised_module.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Rcpp_LVQ_supervised_module.cpp -o Rcpp_LVQ_supervised_module.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Rcpp_LVQ_unsupervised.cpp -o Rcpp_LVQ_unsupervised.o
In file included from Rcpp_BP_supervised_module.cpp:13:
In file included from ./nn_bp.h:19:
In file included from ./nn.h:19:
./connection_matrix.h:54:1: warning: extra ';' inside a class [-Wextra-semi]
54 | ;
| ^
In file included from Rcpp_LVQ_unsupervised.cpp:15:
In file included from ./nn_lvq.h:26:
In file included from ./nn.h:19:
./connection_matrix.h:54:1: warning: extra ';' inside a class [-Wextra-semi]
54 | ;
| ^
In file included from Rcpp_LVQ_supervised_module.cpp:13:
In file included from ./nn_lvq.h:26:
In file included from ./nn.h:19:
./connection_matrix.h:54:1: warning: extra ';' inside a class [-Wextra-semi]
54 | ;
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Rcpp_MAM_supervised_module.cpp -o Rcpp_MAM_supervised_module.o
1 warning generated.
1 warning generated.
In file included from Rcpp_MAM_supervised_module.cpp:13:
In file included from ./nn_mam.h:17:
In file included from ./nn.h:19:
./connection_matrix.h:54:1: warning: extra ';' inside a class [-Wextra-semi]
54 | ;
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Rcpp_NN_module.cpp -o Rcpp_NN_module.o
In file included from Rcpp_NN_module.cpp:11:
In file included from ./nn.h:19:
./connection_matrix.h:54:1: warning: extra ';' inside a class [-Wextra-semi]
54 | ;
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c aux_control.cpp -o aux_control.o
In file included from Rcpp_NN_module.cpp:24:
./additional_parts.h:124:7: warning: variable 'optional_parameter' set but not used [-Wunused-but-set-variable]
124 | DATA optional_parameter = DATA_MIN;
| ^
Rcpp_NN_module.cpp:467:8: warning: variable 'optional_parameter' set but not used [-Wunused-but-set-variable]
467 | DATA optional_parameter = DATA_MIN;
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c component.cpp -o component.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c connection.cpp -o connection.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c connection_matrix.cpp -o connection_matrix.o
In file included from connection_matrix.cpp:15:
./connection_matrix.h:54:1: warning: extra ';' inside a class [-Wextra-semi]
54 | ;
| ^
3 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c nn.cpp -o nn.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c nn_bp.cpp -o nn_bp.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c nn_lvq.cpp -o nn_lvq.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c nnlib2_error.cpp -o nnlib2_error.o
In file included from nn.cpp:6:
In file included from ./nn.h:19:
./connection_matrix.h:54:1: warning: extra ';' inside a class [-Wextra-semi]
54 | ;
| ^
In file included from nn_bp.cpp:17:
In file included from ./nn_bp.h:19:
In file included from ./nn.h:19:
./connection_matrix.h:54:1: warning: extra ';' inside a class [-Wextra-semi]
54 | ;
| ^
In file included from nn_lvq.cpp:21:
In file included from ./nn_lvq.h:26:
In file included from ./nn.h:19:
./connection_matrix.h:54:1: warning: extra ';' inside a class [-Wextra-semi]
54 | ;
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c nnlib2_memory.cpp -o nnlib2_memory.o
1 warning generated.
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c nnlib2_misc.cpp -o nnlib2_misc.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c nnlib2_string.cpp -o nnlib2_string.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c pe.cpp -o pe.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o nnlib2Rcpp.so RcppExports.o Rcpp_Autoencoder.o Rcpp_BP_supervised_module.o Rcpp_LVQ_supervised_module.o Rcpp_LVQ_unsupervised.o Rcpp_MAM_supervised_module.o Rcpp_NN_module.o aux_control.o component.o connection.o connection_matrix.o nn.o nn_bp.o nn_lvq.o nnlib2_error.o nnlib2_memory.o nnlib2_misc.o nnlib2_string.o pe.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/nnlib2Rcpp/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/nnlib2Rcpp/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/nnlib2Rcpp/src'
installing to /data/gannet/ripley/R/packages/tests-clang/nnlib2Rcpp.Rcheck/00LOCK-nnlib2Rcpp/00new/nnlib2Rcpp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nnlib2Rcpp)