* installing *source* package ‘nlmixr2est’ ...
** this is package ‘nlmixr2est’ version ‘3.0.4’
** package ‘nlmixr2est’ successfully unpacked and MD5 sums checked
** using staged installation
--------[begin src/Makevars]--------
# -*- mode: makefile-gmake -*-
ARMA=@ARMA@
BH=@BH@
RCPP=@RCPP@
RXP=@RXP@
CXX_STD = CXX17
PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS)
PKG_CXXFLAGS = -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"$(BH)" -I"$(RCPP)" -I"$(ARMA)" -I"$(RXP)" $(SHLIB_OPENMP_CXXFLAGS) -DARMA_64BIT_WORD=1
SHLIB_LDFLAGS = $(SHLIB_CXXLDFLAGS)
SHLIB_LD = $(SHLIB_CXXLD)
SOURCES_C = init.c rprintf.c merge3.c lbfgsR.c utilc.c
SOURCES_CPP = uninformativeEtas.cpp nlm.cpp filterNormalLike.cpp inner.cpp shi21.cpp nearPD.cpp censEst.cpp saem.cpp expandNlme.cpp npde.cpp shrink.cpp ires.cpp res.cpp cwres.cpp censResid.cpp cholse.cpp neldermead.cpp resid.cpp slice.cpp RcppExportMod.cpp RcppExports.cpp
OBJECTS = $(SOURCES_CPP:.cpp=.o) $(SOURCES_C:.c=.o)
all: $(SHLIB)
$(SHLIB): $(OBJECTS)
--------[end src/Makevars]--------
** libs
using C compiler: ‘clang version 20.1.0-rc2’
using C++ compiler: ‘clang version 20.1.0-rc2’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/nlmixr2est/src'
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c uninformativeEtas.cpp -o uninformativeEtas.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c nlm.cpp -o nlm.o
In file included from uninformativeEtas.cpp:2:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from uninformativeEtas.cpp:2:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from uninformativeEtas.cpp:2:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from uninformativeEtas.cpp:2:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
5 warnings generated.
In file included from nlm.cpp:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from nlm.cpp:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from nlm.cpp:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from nlm.cpp:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
nlm.cpp:399:7: warning: unused variable 'cores' [-Wunused-variable]
399 | int cores = getOpCores(op);
| ^~~~~
nlm.cpp:525:7: warning: unused variable 'cores' [-Wunused-variable]
525 | int cores = getOpCores(op);
| ^~~~~
nlm.cpp:608:12: warning: unused variable 'llik' [-Wunused-variable]
608 | double llik;
| ^~~~
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c filterNormalLike.cpp -o filterNormalLike.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c inner.cpp -o inner.o
8 warnings generated.
In file included from filterNormalLike.cpp:10:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from filterNormalLike.cpp:10:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from filterNormalLike.cpp:10:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from filterNormalLike.cpp:10:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
5 warnings generated.
In file included from inner.cpp:5:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from inner.cpp:5:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from inner.cpp:5:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from inner.cpp:5:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
inner.cpp:3153:26: warning: variable 'k' set but not used [-Wunused-but-set-variable]
3153 | unsigned int i, j = 0, k = 0, ii=0, jj = 0, iA=0, iB=0, iH=0, iVid=0, iLO=0;
| ^
inner.cpp:3153:59: warning: variable 'iH' set but not used [-Wunused-but-set-variable]
3153 | unsigned int i, j = 0, k = 0, ii=0, jj = 0, iA=0, iB=0, iH=0, iVid=0, iLO=0;
| ^
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c shi21.cpp -o shi21.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c nearPD.cpp -o nearPD.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c censEst.cpp -o censEst.o
7 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c saem.cpp -o saem.o
In file included from shi21.cpp:11:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from shi21.cpp:11:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from shi21.cpp:11:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from shi21.cpp:11:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from nearPD.cpp:5:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from nearPD.cpp:5:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from nearPD.cpp:5:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from nearPD.cpp:5:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
5 warnings generated.
5 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c expandNlme.cpp -o expandNlme.o
In file included from saem.cpp:8:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from saem.cpp:8:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from saem.cpp:8:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from saem.cpp:8:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c npde.cpp -o npde.o
5 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c shrink.cpp -o shrink.o
In file included from npde.cpp:2:
In file included from ./npde.h:13:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from npde.cpp:2:
In file included from ./npde.h:13:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from npde.cpp:2:
In file included from ./npde.h:13:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from npde.cpp:2:
In file included from ./npde.h:13:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
npde.cpp:129:15: warning: variable 'hi' set but not used [-Wunused-but-set-variable]
129 | double low, hi, low2, hi2;
| ^
6 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c ires.cpp -o ires.o
In file included from shrink.cpp:2:
In file included from ./shrink.h:5:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from shrink.cpp:2:
In file included from ./shrink.h:5:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from shrink.cpp:2:
In file included from ./shrink.h:5:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from shrink.cpp:2:
In file included from ./shrink.h:5:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
5 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c res.cpp -o res.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c cwres.cpp -o cwres.o
In file included from ires.cpp:2:
In file included from ./ires.h:4:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from ires.cpp:2:
In file included from ./ires.h:4:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from ires.cpp:2:
In file included from ./ires.h:4:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from ires.cpp:2:
In file included from ./ires.h:4:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from res.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from res.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from res.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from res.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from cwres.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from cwres.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from cwres.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
5 warnings generated.
In file included from cwres.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
res.cpp:17:7: warning: unused variable 'idSize' [-Wunused-variable]
17 | int idSize = ID.size();
| ^~~~~~
6 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c censResid.cpp -o censResid.o
5 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c cholse.cpp -o cholse.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c neldermead.cpp -o neldermead.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c resid.cpp -o resid.o
In file included from cholse.cpp:2:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from cholse.cpp:2:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from cholse.cpp:2:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from cholse.cpp:2:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from censResid.cpp:2:
In file included from ./censResid.h:3:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from censResid.cpp:2:
In file included from ./censResid.h:3:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from censResid.cpp:2:
In file included from ./censResid.h:3:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from censResid.cpp:2:
In file included from ./censResid.h:3:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
5 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c slice.cpp -o slice.o
5 warnings generated.
In file included from resid.cpp:2:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from resid.cpp:2:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from resid.cpp:2:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from resid.cpp:2:
In file included from ./armahead.h:13:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2ptr.h:4:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2.h:45:
In file included from /data/gannet/ripley/R/test-clang/rxode2/include/rxode2_RcppExports.h:9:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
5 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExportMod.cpp -o RcppExportMod.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
/usr/local/clang20/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/nlmixr2est.h:7:
In file included from ./../inst/include/nlmixr2est_RcppExports.h:8:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/nlmixr2est.h:7:
In file included from ./../inst/include/nlmixr2est_RcppExports.h:8:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/nlmixr2est.h:7:
In file included from ./../inst/include/nlmixr2est_RcppExports.h:8:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/nlmixr2est.h:7:
In file included from ./../inst/include/nlmixr2est_RcppExports.h:8:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
5 warnings generated.
/usr/local/clang20/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rprintf.c -o rprintf.o
/usr/local/clang20/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c merge3.c -o merge3.o
/usr/local/clang20/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c lbfgsR.c -o lbfgsR.o
/usr/local/clang20/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/n1qn1/include' -I'/data/gannet/ripley/R/test-clang/lbfgsb3c/include' -I'/data/gannet/ripley/R/test-clang/lotri/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c utilc.c -o utilc.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o nlmixr2est.so uninformativeEtas.o nlm.o filterNormalLike.o inner.o shi21.o nearPD.o censEst.o saem.o expandNlme.o npde.o shrink.o ires.o res.o cwres.o censResid.o cholse.o neldermead.o resid.o slice.o RcppExportMod.o RcppExports.o init.o rprintf.o merge3.o lbfgsR.o utilc.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/nlmixr2est/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/nlmixr2est/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/nlmixr2est/src'
installing to /data/gannet/ripley/R/packages/tests-clang/nlmixr2est.Rcheck/00LOCK-nlmixr2est/00new/nlmixr2est/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nlmixr2est)