* installing *source* package ‘moocore’ ...
** package ‘moocore’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.8’
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/moocore/src'
make -C libmoocore all march=none CC="/usr/local/clang18/bin/clang" CFLAGS="-O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 " OPT_CFLAGS="" WARN_CFLAGS="" DEBUG=0 EXE= BINDIR=/data/gannet/ripley/R/packages/tests-clang/moocore/src
make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/moocore/src/libmoocore'
---> Removing /data/gannet/ripley/R/packages/tests-clang/moocore/src/igd <---
---> Removing /data/gannet/ripley/R/packages/tests-clang/moocore/src/epsilon <---
---> Removing /data/gannet/ripley/R/packages/tests-clang/moocore/src/dominatedsets <---
---> Removing /data/gannet/ripley/R/packages/tests-clang/moocore/src/nondominated <---
---> Removing /data/gannet/ripley/R/packages/tests-clang/moocore/src/ndsort <---
---> Removing /data/gannet/ripley/R/packages/tests-clang/moocore/src/eaf <---
---> Removing /data/gannet/ripley/R/packages/tests-clang/moocore/src/hv <---
---> Removing object files: igd.o epsilon.o dominatedsets.o nondominated.o io.o ndsort.o hv_contrib.o hv.o pareto.o whv.o whv_hype.o eaf.o eafdiff.o eaf_main.o eaf3d.o avl.o cmdline.o libutil.o main-hv.o timer.o rng.o mt19937/mt19937.o <---
make default
make[4]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/moocore/src/libmoocore'
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o igd.o igd.c
In file included from igd.c:72:
./cmdline.h:30:2: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
30 | #ifdef MARCH
| ^
./cmdline.h:32:2: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
32 | #endif
| ^
2 warnings generated.
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o epsilon.o epsilon.c
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/hv_contrib.c -o libmoocore/hv_contrib.o
In file included from epsilon.c:66:
./cmdline.h:30:2: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
30 | #ifdef MARCH
| ^
./cmdline.h:32:2: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
32 | #endif
| ^
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/hv.c -o libmoocore/hv.o
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o dominatedsets.o dominatedsets.c
2 warnings generated.
In file included from dominatedsets.c:68:
./cmdline.h:30:2: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
30 | #ifdef MARCH
| ^
./cmdline.h:32:2: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
32 | #endif
| ^
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o nondominated.o nondominated.c
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/pareto.c -o libmoocore/pareto.o
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o io.o io.c
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o ndsort.o ndsort.c
In file included from nondominated.c:57:
./cmdline.h:30:2: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
30 | #ifdef MARCH
| ^
./cmdline.h:32:2: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
32 | #endif
| ^
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o hv.o hv.c
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/whv.c -o libmoocore/whv.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/whv_hype.c -o libmoocore/whv_hype.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/avl.c -o libmoocore/avl.o
In file included from ndsort.c:51:
./cmdline.h:30:2: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
30 | #ifdef MARCH
| ^
./cmdline.h:32:2: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
32 | #endif
| ^
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o whv.o whv.c
2 warnings generated.
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o whv_hype.o whv_hype.c
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o eaf.o eaf.c
2 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/eaf3d.c -o libmoocore/eaf3d.o
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o eafdiff.o eafdiff.c
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/eaf.c -o libmoocore/eaf.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/rng.c -o libmoocore/rng.o
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o eaf_main.o eaf_main.c
2 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/mt19937/mt19937.c -o libmoocore/mt19937/mt19937.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
In file included from eaf_main.c:50:
./cmdline.h:30:2: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
30 | #ifdef MARCH
| ^
./cmdline.h:32:2: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
32 | #endif
| ^
In file included from init.c:20:
./init.h:6:1: warning: must specify at least one argument for '...' parameter of variadic macro [-Wgnu-zero-variadic-macro-arguments]
6 | DECLARE_CALL(SEXP, R_read_datasets, SEXP FILENAME)
| ^
init.c:17:30: note: expanded from macro 'DECLARE_CALL'
17 | {#NAME, (DL_FUNC) &NAME, VA_NARGS(__VA_ARGS__)},
| ^
init.c:8:79: note: expanded from macro 'VA_NARGS'
8 | #define VA_NARGS(...) VA_NARGS_IMPL(__VA_ARGS__, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1)
| ^
init.c:7:9: note: macro 'VA_NARGS_IMPL' defined here
7 | #define VA_NARGS_IMPL(_1, _2, _3, _4, _5, _6, _7, _8, _9, _10, N, ...) N
| ^
In file included from init.c:20:
./init.h:11:1: warning: must specify at least one argument for '...' parameter of variadic macro [-Wgnu-zero-variadic-macro-arguments]
11 | DECLARE_CALL(SEXP, pareto_ranking_C, SEXP DATA)
| ^
init.c:17:30: note: expanded from macro 'DECLARE_CALL'
17 | {#NAME, (DL_FUNC) &NAME, VA_NARGS(__VA_ARGS__)},
| ^
init.c:8:79: note: expanded from macro 'VA_NARGS'
8 | #define VA_NARGS(...) VA_NARGS_IMPL(__VA_ARGS__, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1)
| ^
init.c:7:9: note: macro 'VA_NARGS_IMPL' defined here
7 | #define VA_NARGS_IMPL(_1, _2, _3, _4, _5, _6, _7, _8, _9, _10, N, ...) N
| ^
2 warnings generated.
2 warnings generated.
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o eaf3d.o eaf3d.c
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c Rmoocore.c -o Rmoocore.o
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o cmdline.o cmdline.c
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o libutil.o libutil.c
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o main-hv.o main-hv.c
In file included from main-hv.c:61:
./cmdline.h:30:2: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
30 | #ifdef MARCH
| ^
./cmdline.h:32:2: warning: embedding a directive within macro arguments has undefined behavior [-Wembedded-directive]
32 | #endif
| ^
2 warnings generated.
/usr/local/clang18/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o timer.o timer.c
--> Building /data/gannet/ripley/R/packages/tests-clang/moocore/src/igd version 0.1.9999.5a2bfc7-dirty <---
/usr/local/clang18/bin/clang -o /data/gannet/ripley/R/packages/tests-clang/moocore/src/igd igd.o io.o cmdline.o -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -lm
--> Building /data/gannet/ripley/R/packages/tests-clang/moocore/src/epsilon version 0.1.9999.5a2bfc7-dirty <---
/usr/local/clang18/bin/clang -o /data/gannet/ripley/R/packages/tests-clang/moocore/src/epsilon epsilon.o io.o cmdline.o -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -lm
--> Building /data/gannet/ripley/R/packages/tests-clang/moocore/src/dominatedsets version 0.1.9999.5a2bfc7-dirty <---
/usr/local/clang18/bin/clang -o /data/gannet/ripley/R/packages/tests-clang/moocore/src/dominatedsets dominatedsets.o io.o cmdline.o -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -lm
--> Building /data/gannet/ripley/R/packages/tests-clang/moocore/src/nondominated version 0.1.9999.5a2bfc7-dirty <---
/usr/local/clang18/bin/clang -o /data/gannet/ripley/R/packages/tests-clang/moocore/src/nondominated nondominated.o io.o cmdline.o -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -lm
--> Building /data/gannet/ripley/R/packages/tests-clang/moocore/src/ndsort version 0.1.9999.5a2bfc7-dirty <---
/usr/local/clang18/bin/clang -o /data/gannet/ripley/R/packages/tests-clang/moocore/src/ndsort ndsort.o pareto.o io.o hv_contrib.c hv.o cmdline.o -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -lm
/usr/bin/ld: pareto.o: in function `pareto_rank':
pareto.c:(.text+0x2d9): undefined reference to `Rf_error'
/usr/bin/ld: pareto.c:(.text+0x6ce): undefined reference to `Rf_error'
/usr/bin/ld: pareto.c:(.text+0x6ef): undefined reference to `Rf_error'
/usr/bin/ld: pareto.c:(.text+0x710): undefined reference to `Rf_error'
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[4]: *** [Makefile:160: /data/gannet/ripley/R/packages/tests-clang/moocore/src/ndsort] Error 1
--> Building /data/gannet/ripley/R/packages/tests-clang/moocore/src/eaf version 0.1.9999.5a2bfc7-dirty <---
/usr/local/clang18/bin/clang -o /data/gannet/ripley/R/packages/tests-clang/moocore/src/eaf eaf.o io.o eaf_main.o eaf3d.o avl.o cmdline.o -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -lm
/usr/bin/ld: eaf.o: in function `eaf_create':
eaf.c:(.text+0xaa): undefined reference to `Rf_error'
/usr/bin/ld: eaf.c:(.text+0xc7): undefined reference to `Rf_error'
/usr/bin/ld: eaf.o: in function `eaf_realloc':
eaf.c:(.text+0x1c0): undefined reference to `Rf_error'
/usr/bin/ld: eaf.c:(.text+0x1e1): undefined reference to `Rf_error'
/usr/bin/ld: eaf.o: in function `eaf_store_point_help':
eaf.c:(.text+0x38f): undefined reference to `Rf_error'
/usr/bin/ld: eaf.o:eaf.c:(.text+0x3b0): more undefined references to `Rf_error' follow
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[4]: *** [Makefile:160: /data/gannet/ripley/R/packages/tests-clang/moocore/src/eaf] Error 1
--> Building /data/gannet/ripley/R/packages/tests-clang/moocore/src/hv version 0.1.9999.5a2bfc7-dirty <---
/usr/local/clang18/bin/clang -o /data/gannet/ripley/R/packages/tests-clang/moocore/src/hv main-hv.o io.o timer.o cmdline.o hv.o -DDEBUG=0 -DVERSION='"0.1.9999.5a2bfc7-dirty"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -lm
make[4]: Target 'default' not remade because of errors.
make[4]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/moocore/src/libmoocore'
make[3]: *** [Makefile:224: all] Error 2
make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/moocore/src/libmoocore'
make[2]: *** [Makevars:19: exes] Error 2
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o moocore.so libmoocore/hv_contrib.o libmoocore/hv.o libmoocore/pareto.o libmoocore/whv.o libmoocore/whv_hype.o libmoocore/avl.o libmoocore/eaf3d.o libmoocore/eaf.o libmoocore/io.o libmoocore/rng.o libmoocore/mt19937/mt19937.o init.o Rmoocore.o
make[2]: Target 'all' not remade because of errors.
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/moocore/src'
ERROR: compilation failed for package ‘moocore’
* removing ‘/data/gannet/ripley/R/packages/tests-clang/moocore.Rcheck/moocore’