* installing *source* package ‘moocore’ ...
** package ‘moocore’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.6’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/moocore/src'
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/hv_contrib.c -o libmoocore/hv_contrib.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/hv.c -o libmoocore/hv.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/pareto.c -o libmoocore/pareto.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/whv.c -o libmoocore/whv.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/whv_hype.c -o libmoocore/whv_hype.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/avl.c -o libmoocore/avl.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/eaf3d.c -o libmoocore/eaf3d.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/eaf.c -o libmoocore/eaf.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/io.c -o libmoocore/io.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/rng.c -o libmoocore/rng.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/mt19937/mt19937.c -o libmoocore/mt19937/mt19937.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
In file included from init.c:27:
./init.h:6:1: warning: passing no argument for the '...' parameter of a variadic macro is a C23 extension [-Wc23-extensions]
6 | DECLARE_CALL(R_read_datasets, SEXP FILENAME)
| ^
init.c:24:30: note: expanded from macro 'DECLARE_CALL'
24 | {#NAME, (DL_FUNC) &NAME, VA_NARGS(__VA_ARGS__)},
| ^
init.c:15:79: note: expanded from macro 'VA_NARGS'
15 | #define VA_NARGS(...) VA_NARGS_IMPL(__VA_ARGS__, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1)
| ^
init.c:14:9: note: macro 'VA_NARGS_IMPL' defined here
14 | #define VA_NARGS_IMPL(_1, _2, _3, _4, _5, _6, _7, _8, _9, _10, N, ...) N
| ^
In file included from init.c:27:
./init.h:11:1: warning: passing no argument for the '...' parameter of a variadic macro is a C23 extension [-Wc23-extensions]
11 | DECLARE_CALL(pareto_ranking_C, SEXP DATA)
| ^
init.c:24:30: note: expanded from macro 'DECLARE_CALL'
24 | {#NAME, (DL_FUNC) &NAME, VA_NARGS(__VA_ARGS__)},
| ^
init.c:15:79: note: expanded from macro 'VA_NARGS'
15 | #define VA_NARGS(...) VA_NARGS_IMPL(__VA_ARGS__, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1)
| ^
init.c:14:9: note: macro 'VA_NARGS_IMPL' defined here
14 | #define VA_NARGS_IMPL(_1, _2, _3, _4, _5, _6, _7, _8, _9, _10, N, ...) N
| ^
2 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c Rmoocore.c -o Rmoocore.o
/usr/local/clang19/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o moocore.so libmoocore/hv_contrib.o libmoocore/hv.o libmoocore/pareto.o libmoocore/whv.o libmoocore/whv_hype.o libmoocore/avl.o libmoocore/eaf3d.o libmoocore/eaf.o libmoocore/io.o libmoocore/rng.o libmoocore/mt19937/mt19937.o init.o Rmoocore.o
make -C libmoocore all march=none CC="/usr/local/clang19/bin/clang" CFLAGS="-O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 " OPT_CFLAGS="" WARN_CFLAGS="" DEBUG=0 EXE= BINDIR=/data/gannet/ripley/R/packages/tests-clang/moocore/src
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/moocore/src/libmoocore'
---> Removing /data/gannet/ripley/R/packages/tests-clang/moocore/src/igd <---
---> Removing /data/gannet/ripley/R/packages/tests-clang/moocore/src/epsilon <---
---> Removing /data/gannet/ripley/R/packages/tests-clang/moocore/src/dominatedsets <---
---> Removing /data/gannet/ripley/R/packages/tests-clang/moocore/src/nondominated <---
---> Removing /data/gannet/ripley/R/packages/tests-clang/moocore/src/ndsort <---
---> Removing /data/gannet/ripley/R/packages/tests-clang/moocore/src/eaf <---
---> Removing /data/gannet/ripley/R/packages/tests-clang/moocore/src/hv <---
---> Removing object files: igd.o epsilon.o dominatedsets.o nondominated.o io.o ndsort.o hv_contrib.o hv.o pareto.o whv.o whv_hype.o eaf.o eafdiff.o eaf_main.o eaf3d.o avl.o cmdline.o libutil.o main-hv.o timer.o rng.o mt19937/mt19937.o <---
make default
make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/moocore/src/libmoocore'
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o igd.o igd.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o epsilon.o epsilon.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o dominatedsets.o dominatedsets.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o nondominated.o nondominated.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o io.o io.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o ndsort.o ndsort.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o hv_contrib.o hv_contrib.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o hv.o hv.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o pareto.o pareto.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o whv.o whv.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o whv_hype.o whv_hype.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o eaf.o eaf.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o eafdiff.o eafdiff.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o eaf_main.o eaf_main.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o eaf3d.o eaf3d.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o avl.o avl.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o cmdline.o cmdline.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o libutil.o libutil.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o main-hv.o main-hv.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o timer.o timer.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o rng.o rng.c
/usr/local/clang19/bin/clang -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c -o mt19937/mt19937.o mt19937/mt19937.c
--> Building /data/gannet/ripley/R/packages/tests-clang/moocore/src/igd version 0.1.2 <---
/usr/local/clang19/bin/clang -o /data/gannet/ripley/R/packages/tests-clang/moocore/src/igd igd.o io.o cmdline.o -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -lm
--> Building /data/gannet/ripley/R/packages/tests-clang/moocore/src/epsilon version 0.1.2 <---
/usr/local/clang19/bin/clang -o /data/gannet/ripley/R/packages/tests-clang/moocore/src/epsilon epsilon.o io.o cmdline.o -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -lm
--> Building /data/gannet/ripley/R/packages/tests-clang/moocore/src/dominatedsets version 0.1.2 <---
/usr/local/clang19/bin/clang -o /data/gannet/ripley/R/packages/tests-clang/moocore/src/dominatedsets dominatedsets.o io.o cmdline.o -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -lm
--> Building /data/gannet/ripley/R/packages/tests-clang/moocore/src/nondominated version 0.1.2 <---
/usr/local/clang19/bin/clang -o /data/gannet/ripley/R/packages/tests-clang/moocore/src/nondominated nondominated.o io.o cmdline.o -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -lm
--> Building /data/gannet/ripley/R/packages/tests-clang/moocore/src/ndsort version 0.1.2 <---
/usr/local/clang19/bin/clang -o /data/gannet/ripley/R/packages/tests-clang/moocore/src/ndsort ndsort.o pareto.o io.o hv_contrib.c hv.o cmdline.o -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -lm
--> Building /data/gannet/ripley/R/packages/tests-clang/moocore/src/eaf version 0.1.2 <---
/usr/local/clang19/bin/clang -o /data/gannet/ripley/R/packages/tests-clang/moocore/src/eaf eaf.o io.o eaf_main.o eaf3d.o avl.o cmdline.o -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -lm
--> Building /data/gannet/ripley/R/packages/tests-clang/moocore/src/hv version 0.1.2 <---
/usr/local/clang19/bin/clang -o /data/gannet/ripley/R/packages/tests-clang/moocore/src/hv main-hv.o io.o timer.o cmdline.o hv.o -DDEBUG=0 -DVERSION='"0.1.2"' -DMARCH='"unknown"' -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -lm
make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/moocore/src/libmoocore'
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/moocore/src/libmoocore'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/moocore/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/moocore/src'
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/hv_contrib.c -o libmoocore/hv_contrib.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/hv.c -o libmoocore/hv.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/pareto.c -o libmoocore/pareto.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/whv.c -o libmoocore/whv.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/whv_hype.c -o libmoocore/whv_hype.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/avl.c -o libmoocore/avl.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/eaf3d.c -o libmoocore/eaf3d.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/eaf.c -o libmoocore/eaf.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/io.c -o libmoocore/io.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c libmoocore/rng.c -o libmoocore/rng.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/moocore/src'
installing via 'install.libs.R' to /data/gannet/ripley/R/packages/tests-clang/moocore.Rcheck/00LOCK-moocore/00new/moocore
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (moocore)