* installing *source* package ‘monolix2rx’ ...
** package ‘monolix2rx’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.6’
using C++ compiler: ‘clang version 19.1.6’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/monolix2rx/src'
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dataSettings.c -o dataSettings.o
In file included from dataSettings.c:21:
./dataSettings.g.d_parser.h:3:9: warning: 'printf' macro redefined [-Wmacro-redefined]
3 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c equation.c -o equation.o
In file included from equation.c:21:
./equation.g.d_parser.h:3:9: warning: 'printf' macro redefined [-Wmacro-redefined]
3 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c longDef.c -o longDef.o
In file included from longDef.c:21:
./longDef.g.d_parser.h:3:9: warning: 'printf' macro redefined [-Wmacro-redefined]
3 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c longOutput.c -o longOutput.o
In file included from longOutput.c:21:
./longOutput.g.d_parser.h:3:9: warning: 'printf' macro redefined [-Wmacro-redefined]
3 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mem.c -o mem.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mlxtranContent.c -o mlxtranContent.o
In file included from mlxtranContent.c:21:
./mlxtranContent.g.d_parser.h:3:9: warning: 'printf' macro redefined [-Wmacro-redefined]
3 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mlxtranFileinfo.c -o mlxtranFileinfo.o
In file included from mlxtranFileinfo.c:21:
./mlxtranFileinfo.g.d_parser.h:3:9: warning: 'printf' macro redefined [-Wmacro-redefined]
3 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mlxtranFit.c -o mlxtranFit.o
In file included from mlxtranFit.c:21:
./mlxtranFit.g.d_parser.h:3:9: warning: 'printf' macro redefined [-Wmacro-redefined]
3 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mlxtranInd.c -o mlxtranInd.o
In file included from mlxtranInd.c:21:
./mlxtranInd.g.d_parser.h:3:9: warning: 'printf' macro redefined [-Wmacro-redefined]
3 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mlxtranIndDefinition.c -o mlxtranIndDefinition.o
In file included from mlxtranIndDefinition.c:21:
./mlxtranIndDefinition.g.d_parser.h:3:9: warning: 'printf' macro redefined [-Wmacro-redefined]
3 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mlxtranOp.c -o mlxtranOp.o
In file included from mlxtranOp.c:21:
./mlxtranOp.g.d_parser.h:3:9: warning: 'printf' macro redefined [-Wmacro-redefined]
3 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mlxtranParameter.c -o mlxtranParameter.o
In file included from mlxtranParameter.c:21:
./mlxtranParameter.g.d_parser.h:3:9: warning: 'printf' macro redefined [-Wmacro-redefined]
3 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mlxtranTask.c -o mlxtranTask.o
In file included from mlxtranTask.c:21:
./mlxtranTask.g.d_parser.h:3:9: warning: 'printf' macro redefined [-Wmacro-redefined]
3 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c sbuf.c -o sbuf.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c shared.c -o shared.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c summaryData.c -o summaryData.o
In file included from summaryData.c:21:
./summaryData.g.d_parser.h:3:9: warning: 'printf' macro redefined [-Wmacro-redefined]
3 | #define printf Rprintf
| ^
/usr/include/bits/stdio2.h:89:11: note: previous definition is here
89 | # define printf(...) \
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/dparser/include' -I'/data/gannet/ripley/R/test-clang/rxode2/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c util.cpp -o util.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o monolix2rx.so dataSettings.o equation.o init.o longDef.o longOutput.o mem.o mlxtranContent.o mlxtranFileinfo.o mlxtranFit.o mlxtranInd.o mlxtranIndDefinition.o mlxtranOp.o mlxtranParameter.o mlxtranTask.o sbuf.o shared.o summaryData.o util.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/monolix2rx/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/monolix2rx/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/monolix2rx/src'
installing to /data/gannet/ripley/R/packages/tests-clang/monolix2rx.Rcheck/00LOCK-monolix2rx/00new/monolix2rx/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (monolix2rx)