* installing *source* package ‘mgee2’ ...
** package ‘mgee2’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/mgee2/src'
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mgee2.c -o mgee2.o
mgee2.c:66:10: warning: variable 'one_ptr' set but not used [-Wunused-but-set-variable]
66 | int *one_ptr;
| ^
mgee2.c:645:27: warning: variable 'last_iter' set but not used [-Wunused-but-set-variable]
645 | int one, maxit, iter, last_iter, convergence;
| ^
mgee2.c:645:38: warning: variable 'convergence' set but not used [-Wunused-but-set-variable]
645 | int one, maxit, iter, last_iter, convergence;
| ^
mgee2.c:646:16: warning: variable 'n_extID' set but not used [-Wunused-but-set-variable]
646 | int nENUM, n_extID, len_Z, nrow_DM_i, nXDM_ENUM;
| ^
mgee2.c:646:25: warning: variable 'len_Z' set but not used [-Wunused-but-set-variable]
646 | int nENUM, n_extID, len_Z, nrow_DM_i, nXDM_ENUM;
| ^
mgee2.c:3003:12: warning: variable 'elem' set but not used [-Wunused-but-set-variable]
3003 | double elem;
| ^
mgee2.c:1528:16: warning: unused function 'VC_GEE_matadd' [-Wunused-function]
1528 | static MATRIX *VC_GEE_matadd(MATRIX *mat1, MATRIX *mat2){
| ^~~~~~~~~~~~~
mgee2.c:1709:16: warning: unused function 'VC_GEE_col_1s' [-Wunused-function]
1709 | static MATRIX *VC_GEE_col_1s(int k){
| ^~~~~~~~~~~~~
mgee2.c:1478:16: warning: unused function 'VC_GEE_matabs' [-Wunused-function]
1478 | static MATRIX *VC_GEE_matabs(MATRIX *x){
| ^~~~~~~~~~~~~
mgee2.c:1512:16: warning: unused function 'VC_GEE_matexp' [-Wunused-function]
1512 | static MATRIX *VC_GEE_matexp(MATRIX *x){
| ^~~~~~~~~~~~~
mgee2.c:1622:16: warning: unused function 'VC_GEE_px1_times_pxq' [-Wunused-function]
1622 | static MATRIX *VC_GEE_px1_times_pxq(MATRIX *px1, MATRIX *pxq){
| ^~~~~~~~~~~~~~~~~~~~
mgee2.c:1652:16: warning: unused function 'VC_GEE_pxq_divby_px1' [-Wunused-function]
1652 | static MATRIX *VC_GEE_pxq_divby_px1(MATRIX *pxq, MATRIX *px1){
| ^~~~~~~~~~~~~~~~~~~~
mgee2.c:1682:16: warning: unused function 'VC_GEE_scalar_times_matrix' [-Wunused-function]
1682 | static MATRIX *VC_GEE_scalar_times_matrix(double a, MATRIX *X){
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
mgee2.c:1698:16: warning: unused function 'VC_GEE_ident' [-Wunused-function]
1698 | static MATRIX *VC_GEE_ident(int ord){
| ^~~~~~~~~~~~
mgee2.c:1367:16: warning: unused function 'VC_GEE_extract_cols' [-Wunused-function]
1367 | static MATRIX *VC_GEE_extract_cols(MATRIX *x, int VC_GEE_start, int end){
| ^~~~~~~~~~~~~~~~~~~
mgee2.c:1744:16: warning: unused function 'VC_GEE_diag_as_vec' [-Wunused-function]
1744 | static MATRIX *VC_GEE_diag_as_vec(MATRIX *inmat){
| ^~~~~~~~~~~~~~~~~~
mgee2.c:1762:16: warning: unused function 'VC_GEE_matsqrt' [-Wunused-function]
1762 | static MATRIX *VC_GEE_matsqrt(MATRIX *x){
| ^~~~~~~~~~~~~~
mgee2.c:1778:16: warning: unused function 'VC_GEE_mat1over' [-Wunused-function]
1778 | static MATRIX *VC_GEE_mat1over(MATRIX *x){
| ^~~~~~~~~~~~~~~
mgee2.c:1494:15: warning: unused function 'VC_GEE_matmax' [-Wunused-function]
1494 | static double VC_GEE_matmax(MATRIX *x){
| ^~~~~~~~~~~~~
mgee2.c:1464:15: warning: unused function 'VC_GEE_elsum' [-Wunused-function]
1464 | static double VC_GEE_elsum(MATRIX *x)
| ^~~~~~~~~~~~
mgee2.c:1391:12: warning: unused function 'VC_GEE_split' [-Wunused-function]
1391 | static int VC_GEE_split(MATRIX *matptr, MATRIX *discptr, MATRIX *matarrptr[]){
| ^~~~~~~~~~~~
mgee2.c:1721:12: warning: unused function 'VC_GEE_nchanges' [-Wunused-function]
1721 | static int VC_GEE_nchanges(MATRIX *X){
| ^~~~~~~~~~~~~~~
mgee2.c:1795:16: warning: unused function 'get_seq1' [-Wunused-function]
1795 | static MATRIX *get_seq1(int el_start, int end){
| ^~~~~~~~
mgee2.c:1810:16: warning: unused function 'get_rep_scalar' [-Wunused-function]
1810 | static MATRIX *get_rep_scalar(int a, int nrep){
| ^~~~~~~~~~~~~~
mgee2.c:1824:16: warning: unused function 'get_rep' [-Wunused-function]
1824 | static MATRIX *get_rep(MATRIX *x, int nrep){
| ^~~~~~~
mgee2.c:1844:16: warning: unused function 'get_kronecker' [-Wunused-function]
1844 | static MATRIX *get_kronecker(MATRIX *x, MATRIX *y){
| ^~~~~~~~~~~~~
mgee2.c:1866:16: warning: unused function 'get_sum1row' [-Wunused-function]
1866 | static MATRIX *get_sum1row(MATRIX *inmat){
| ^~~~~~~~~~~
mgee2.c:1892:16: warning: unused function 'get_sum2col' [-Wunused-function]
1892 | static MATRIX *get_sum2col(MATRIX *inmat){
| ^~~~~~~~~~~
mgee2.c:1918:16: warning: unused function 'VC_GEE_matexpit' [-Wunused-function]
1918 | static MATRIX *VC_GEE_matexpit(MATRIX *x){
| ^~~~~~~~~~~~~~~
mgee2.c:2095:16: warning: unused function 'get_cbind' [-Wunused-function]
2095 | static MATRIX *get_cbind(MATRIX *mat1, MATRIX *mat2){
| ^~~~~~~~~
mgee2.c:2582:16: warning: unused function 'matrix_subtract' [-Wunused-function]
2582 | static MATRIX *matrix_subtract(MATRIX *mat1, MATRIX *mat2)
| ^~~~~~~~~~~~~~~
mgee2.c:2608:16: warning: unused function 'matrix_multiply' [-Wunused-function]
2608 | static MATRIX *matrix_multiply(MATRIX *mat1, MATRIX *mat2)
| ^~~~~~~~~~~~~~~
mgee2.c:3259:15: warning: unused function 'get_1_rowsum' [-Wunused-function]
3259 | static double get_1_rowsum(MATRIX *X, int i)
| ^~~~~~~~~~~~
mgee2.c:2463:13: warning: unused function 'row_replace' [-Wunused-function]
2463 | static void row_replace(MATRIX *inmat, int i, MATRIX *outmat, int j)
| ^~~~~~~~~~~
mgee2.c:2484:13: warning: unused function 'col_replace' [-Wunused-function]
2484 | static void col_replace(MATRIX *inmat, int i, MATRIX *outmat, int j)
| ^~~~~~~~~~~
mgee2.c:2508:13: warning: unused function 'rows_plug' [-Wunused-function]
2508 | static void rows_plug(MATRIX *inmat, int i1, int i2, MATRIX *outmat, int j)
| ^~~~~~~~~
mgee2.c:2756:13: warning: unused function 'get_matsub' [-Wunused-function]
2756 | static void get_matsub(MATRIX *mat1,
| ^~~~~~~~~~
mgee2.c:2781:13: warning: unused function 'get_matadd' [-Wunused-function]
2781 | static void get_matadd(MATRIX *mat1,
| ^~~~~~~~~~
mgee2.c:2823:13: warning: unused function 'get_matmult' [-Wunused-function]
2823 | static void get_matmult(MATRIX *mat1,
| ^~~~~~~~~~~
mgee2.c:2639:13: warning: unused function 'matrix_elem_mult' [-Wunused-function]
2639 | static void matrix_elem_mult(MATRIX *inmat, MATRIX *outmat)
| ^~~~~~~~~~~~~~~~
mgee2.c:2661:13: warning: unused function 'matrix_row_mult' [-Wunused-function]
2661 | static void matrix_row_mult(MATRIX *rowvec, MATRIX *outmat) /* row vector times a matrix*/
| ^~~~~~~~~~~~~~~
mgee2.c:2686:13: warning: unused function 'matrix_col_mult' [-Wunused-function]
2686 | static void matrix_col_mult(MATRIX *colvec, MATRIX *outmat) /* col vector times a matrix*/
| ^~~~~~~~~~~~~~~
mgee2.c:2921:13: warning: unused function 'outer_colvec_to' [-Wunused-function]
2921 | static void outer_colvec_to(MATRIX *colvec,
| ^~~~~~~~~~~~~~~
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c packagename_init.c -o packagename_init.o
43 warnings generated.
/usr/local/clang19/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o mgee2.so mgee2.o packagename_init.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/mgee2/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/mgee2/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/mgee2/src'
installing to /data/gannet/ripley/R/packages/tests-clang/mgee2.Rcheck/00LOCK-mgee2/00new/mgee2/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mgee2)