- using R Under development (unstable) (2025-02-19 r87749)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 20.1.0-rc2
flang version 20.1.0-rc2
- running under: Fedora Linux 40 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘merTools/DESCRIPTION’ ... OK
- this is package ‘merTools’ version ‘0.6.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘merTools’ can be installed ... [25s/36s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [38s/50s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [10s/14s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [137s/109s] ERROR
Running ‘testthat-a_m.R’ [63s/51s]
Running ‘testthat-m_z.R’ [74s/58s]
Running the tests in ‘tests/testthat-m_z.R’ failed.
Complete output:
> library(testthat)
> library(merTools)
Loading required package: arm
Loading required package: MASS
Loading required package: Matrix
Loading required package: lme4
arm (Version 1.14-4, built: 2024-4-1)
Working directory is /data/gannet/ripley/R/packages/tests-clang/merTools.Rcheck/tests
>
>
> test_check("merTools", filter = "^[m-z]")
Starting 2 test processes
[ FAIL 1 | WARN 50 | SKIP 36 | PASS 249 ]
══ Skipped tests (36) ══════════════════════════════════════════════════════════
• On CRAN (36): 'test-merModList.R:10:3', 'test-merModList.R:46:3',
'test-merModList.R:72:3', 'test-merModList.R:128:3', 'test-plots.R:6:3',
'test-predict.R:6:3', 'test-predict.R:28:3', 'test-predict.R:99:3',
'test-predict1.R:7:3', 'test-predict1.R:35:3', 'test-predict1.R:76:3',
'test-predict1.R:118:3', 'test-predict2.R:4:3', 'test-predict2.R:27:3',
'test-predict2.R:55:3', 'test-predict2.R:86:3', 'test-predict2.R:132:3',
'test-predict2.R:150:3', 'test-predict2.R:165:3', 'test-predict2.R:200:3',
'test-predict2.R:228:3', 'test-predict3.R:5:3', 'test-predict3.R:42:3',
'test-predict3.R:108:3', 'test-predict3.R:135:3', 'test-predict3.R:156:3',
'test-predict4.R:6:3', 'test-predict4.R:40:3', 'test-predict4.R:105:3',
'test-predict4.R:198:3', 'test-subboot.R:31:3', 'test-subboot.R:51:3',
'test-substEff.R:9:3', 'test-substEff.R:27:3', 'test-substEff.R:56:3',
'test-substEff.R:103:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-seeds.R:45:3'): Equivalent seeds return equivalent results ───
identical(s1a, s2) is not FALSE
`actual`: TRUE
`expected`: FALSE
[ FAIL 1 | WARN 50 | SKIP 36 | PASS 249 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [11s/15s] OK
- checking PDF version of manual ... [9s/14s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR