* installing *source* package ‘matrixprofiler’ ...
** package ‘matrixprofiler’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.5’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/matrixprofiler/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread.h:9:
/data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   10 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c contrast.cpp -o contrast.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c fft.cpp -o fft.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c mass.cpp -o mass.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c mathtools.cpp -o mathtools.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c mpx.cpp -o mpx.o
In file included from mass.cpp:6:
In file included from ./mass.h:6:
In file included from /data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread.h:9:
/data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   10 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c mpx_parallel.cpp -o mpx_parallel.o
In file included from mathtools.cpp:11:
In file included from /data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread.h:9:
/data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   10 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
In file included from mpx.cpp:13:
In file included from /data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread.h:9:
/data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   10 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
In file included from mpx_parallel.cpp:13:
In file included from /data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread.h:9:
/data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   10 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c scrimp.cpp -o scrimp.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c stamp.cpp -o stamp.o
1 warning generated.
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c stomp.cpp -o stomp.o
In file included from scrimp.cpp:7:
In file included from ./mass.h:6:
In file included from /data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread.h:9:
/data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   10 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
scrimp.cpp:517:13: warning: variable 'j' set but not used [-Wunused-but-set-variable]
  517 |     int64_t j = 1;
      |             ^
scrimp.cpp:579:13: warning: variable 'j' set but not used [-Wunused-but-set-variable]
  579 |     int64_t j = 1;
      |             ^
In file included from stamp.cpp:8:
In file included from ./mass.h:6:
In file included from /data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread.h:9:
/data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   10 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
In file included from stomp.cpp:7:
In file included from ./mass.h:6:
In file included from /data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread.h:9:
/data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   10 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppParallel/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppThread/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include   -DRCPP_PARALLEL_USE_TBB=1 -DSTRICT_R_HEADERS -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c windowfunc.cpp -o windowfunc.o
3 warnings generated.
1 warning generated.
In file included from windowfunc.cpp:25:
In file included from /data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread.h:9:
/data/gannet/ripley/R/test-clang/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   10 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o matrixprofiler.so RcppExports.o contrast.o fft.o mass.o mathtools.o mpx.o mpx_parallel.o scrimp.o stamp.o stomp.o windowfunc.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/matrixprofiler/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/matrixprofiler/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/matrixprofiler/src'
installing to /data/gannet/ripley/R/packages/tests-clang/matrixprofiler.Rcheck/00LOCK-matrixprofiler/00new/matrixprofiler/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (matrixprofiler)