* installing *source* package ‘marked’ ...
** package ‘marked’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.5’
using Fortran compiler: ‘flang-new version 19.1.5’
using C++ compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/marked/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c bayesCR.cpp -o bayesCR.o
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c cjs.f -o cjs.o
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c cjs1tldmat.f -o cjs1tldmat.o
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c cjs1tlgam.f -o cjs1tlgam.o
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c cjs2tldmat.f -o cjs2tldmat.o
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c cjs2tlgam.f -o cjs2tlgam.o
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c cjsdmat.f -o cjsdmat.o
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c cjsgamma.f -o cjsgamma.o
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c hmm_like.f -o hmm_like.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c init.c -o init.o
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c ms2gamma.f -o ms2gamma.o
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c msdmat.f -o msdmat.o
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c msgamma.f -o msgamma.o
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c mvmsdmat.f -o mvmsdmat.o
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c ums2dmat.f -o ums2dmat.o
/usr/local/clang19/bin/flang-new  -fpic  -O2 -pedantic  -c umsdmat.f -o umsdmat.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o marked.so bayesCR.o cjs.o cjs1tldmat.o cjs1tlgam.o cjs2tldmat.o cjs2tlgam.o cjsdmat.o cjsgamma.o hmm_like.o init.o ms2gamma.o msdmat.o msgamma.o mvmsdmat.o ums2dmat.o umsdmat.o -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/marked/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/marked/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/marked/src'
installing to /data/gannet/ripley/R/packages/tests-clang/marked.Rcheck/00LOCK-marked/00new/marked/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (marked)