* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/ltable.Rcheck’
* using R Under development (unstable) (2025-02-28 r87848)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 20.1.0-rc3
    flang version 20.1.0-rc3
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘ltable/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ltable’ version ‘2.0.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ltable’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/ltable-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s/21s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [110s/132s] ERROR
Running examples in ‘ltable-Ex.R’ failed
The error most likely occurred in:

> ### Name: renewal
> ### Title: Function _renewal_
> ### Aliases: renewal
> ### Keywords: utilities
> 
> ### ** Examples
> 
> require(ltable)
> data(tdata, package="ltable")
> res1<-MCLogLin(Counts~smoker +contraceptive +tromb +
+ contraceptive*tromb, data=tdata, draw=5000, burnin=500)

Call:
MCLogLin(formula = Counts ~ smoker + contraceptive + tromb + 
    contraceptive * tromb, data = tdata, draw = 5000, burnin = 500)


Coefficients:
                                  Estimate  Std.Error  |z-score|   Pr(>|z|)
(Intercept)                      4.415e+00  3.907e-01  1.130e+01  1.325e-29 
smokerYes                       -9.726e-01  3.916e-01  2.483e+00  1.302e-02 
contraceptiveYes                -2.407e+00  5.858e-01  4.108e+00  3.988e-05 
trombTrombol                    -1.192e+00  5.153e-01  2.313e+00  2.072e-02 
contraceptiveYes:trombTrombol    2.450e+00  7.980e-01  3.070e+00  2.138e-03 
phi                              4.726e+00  7.393e-01  6.392e+00  1.634e-10 


Model fit:
MCMC fitting
Samplers : Gibbs for expected counts, Slice for regr. coeff. and inv.var.par. phi
Language: R
Jacobian reciprocal condition number =  0.05062997 
chisq/n =  0.02153245 
Deviance=  0.01510963 
NULL Deviance=  7.686497 
Log.likelihood=  -27.66856 
AIC(1) =  65.33713 
AIC(n) =  8.167141 
BIC =  65.73433 


Residuals report (Y denotes Counts):
Row Ovserved Y Predicted Y Raw Residual Pearson Residual Anscombe Residual
 1         14      12.425        1.575            0.235            0.888 
 2          2       2.401       -0.401           -0.211           -0.534 
 3          7       7.433       -0.433           -0.099           -0.331 
 4         22      22.810       -0.810           -0.070           -0.328 
 5         12      13.588       -1.588           -0.219           -0.881 
 6          8       7.600        0.400            0.090            0.298 
 7         25      24.510        0.490            0.040            0.188 
 8         84      83.083        0.917            0.023            0.163 


> renewal(res1[,1], Astate=5)
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error in astart:lengthcprob : NA/NaN argument
Calls: renewal -> which
Execution halted
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR