* installing *source* package ‘lpSolveAPI’ ...
** package ‘lpSolveAPI’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/lpSolveAPI/src'
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c RlpSolve.c -o RlpSolve.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c RlpSolveLink.c -o RlpSolveLink.o
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/lpSolveAPI/src/lp_solve'
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c colamd.c -o colamd.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_MDO.c -o lp_MDO.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_mipbb.c -o lp_mipbb.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_rlp.c -o lp_rlp.o
lp_rlp.c:1328:5: warning: variable 'lp_yynerrs' set but not used [-Wunused-but-set-variable]
1328 | int lp_yynerrs;
| ^
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c mmio.c -o mmio.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c commonlib.c -o commonlib.o
1 warning generated.
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_MPS.c -o lp_MPS.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_params.c -o lp_params.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_scale.c -o lp_scale.o
lp_scale.c:367:19: warning: variable 'error' set but not used [-Wunused-but-set-variable]
367 | double check, error;
| ^
1 warning generated.
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_SOS.c -o lp_SOS.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_presolve.c -o lp_presolve.o
lp_presolve.c:812:41: warning: variable 'countC' set but not used [-Wunused-but-set-variable]
812 | int status = RUNNING, countR = 0, countC = 0,
| ^
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_simplex.c -o lp_simplex.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c yacc_read.c -o yacc_read.o
1 warning generated.
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c ini.c -o ini.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_crash.c -o lp_crash.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_price.c -o lp_price.o
lp_price.c:665:24: warning: variable 'nz' set but not used [-Wunused-but-set-variable]
665 | int i, j, ib, ie, nz, nc;
| ^
1 warning generated.
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_utils.c -o lp_utils.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_Hash.c -o lp_Hash.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_lib.c -o lp_lib.o
lp_lib.c:1272:26: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
1272 | if((lp->objfromvalue == NULL) /* || (lp->objtillvalue == NULL) */) {
| ~~~~~~~~~~~~~~~~~^~~~~~~
lp_lib.c:1272:26: note: remove extraneous parentheses around the comparison to silence this warning
1272 | if((lp->objfromvalue == NULL) /* || (lp->objtillvalue == NULL) */) {
| ~ ^ ~
lp_lib.c:1272:26: note: use '=' to turn this equality comparison into an assignment
1272 | if((lp->objfromvalue == NULL) /* || (lp->objtillvalue == NULL) */) {
| ^~
| =
lp_lib.c:1278:28: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
1278 | if((lp->objfromvalue == NULL) /* || (lp->objtillvalue == NULL) */)
| ~~~~~~~~~~~~~~~~~^~~~~~~
lp_lib.c:1278:28: note: remove extraneous parentheses around the comparison to silence this warning
1278 | if((lp->objfromvalue == NULL) /* || (lp->objtillvalue == NULL) */)
| ~ ^ ~
lp_lib.c:1278:28: note: use '=' to turn this equality comparison into an assignment
1278 | if((lp->objfromvalue == NULL) /* || (lp->objtillvalue == NULL) */)
| ^~
| =
lp_lib.c:4446:30: warning: variable 'aREAL' set but not used [-Wunused-but-set-variable]
4446 | int aBIN = 0, aINT = 0, aREAL = 0,
| ^
lp_lib.c:9043:26: warning: variable 'dualOF' set but not used [-Wunused-but-set-variable]
9043 | LPSREAL scale0, value, dualOF;
| ^
4 warnings generated.
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_pricePSE.c -o lp_pricePSE.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_wlp.c -o lp_wlp.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_LUSOL.c -o lp_LUSOL.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_matrix.c -o lp_matrix.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lp_report.c -o lp_report.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c lusol.c -o lusol.o
/usr/local/clang19/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -isystem /usr/local/clang19/include -I/usr/local/clang/include -I../../inst/include -I/data/gannet/ripley/R/R-clang/include -DYY_NO_INPUT -DR_EMBEDDED_LPSOLVE -DYY_NEVER_INTERACTIVE -DPARSER_LP -DINVERSE_ACTIVE=INVERSE_LUSOL -DRoleIsExternalInvEngine -c myblas.c -o myblas.o
ar rc liblp_solve.a colamd.o lp_MDO.o lp_mipbb.o lp_rlp.o mmio.o commonlib.o lp_MPS.o lp_params.o lp_scale.o lp_SOS.o lp_presolve.o lp_simplex.o yacc_read.o ini.o lp_crash.o lp_price.o lp_utils.o lp_Hash.o lp_lib.o lp_pricePSE.o lp_wlp.o lp_LUSOL.o lp_matrix.o lp_report.o lusol.o myblas.o && ranlib liblp_solve.a
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/lpSolveAPI/src/lp_solve'
/usr/local/clang19/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o lpSolveAPI.so RlpSolve.o RlpSolveLink.o -Llp_solve -llp_solve -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/lpSolveAPI/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/lpSolveAPI/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/lpSolveAPI/src'
installing to /data/gannet/ripley/R/packages/tests-clang/lpSolveAPI.Rcheck/00LOCK-lpSolveAPI/00new/lpSolveAPI/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lpSolveAPI)