* installing *source* package ‘lotri’ ...
** this is package ‘lotri’ version ‘1.0.0’
** package ‘lotri’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 20.1.0-rc2’
using C++ compiler: ‘clang version 20.1.0-rc2’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/lotri/src'
/usr/local/clang20/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c asLotriMat.c -o asLotriMat.o
/usr/local/clang20/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c lotriBounds.c -o lotriBounds.o
/usr/local/clang20/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c lotriLstToMat.c -o lotriLstToMat.o
/usr/local/clang20/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c lotriNest.c -o lotriNest.o
/usr/local/clang20/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c lotriProp.c -o lotriProp.o
/usr/local/clang20/bin/clang -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c matlist.c -o matlist.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c nearPD.cpp -o nearPD.o
In file included from nearPD.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/cpp11armadillo/include/armadillo.hpp:28:
In file included from /data/gannet/ripley/R/test-clang/cpp11armadillo/include/r_messages.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:3:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
      |                    ~~~~~~~~~~~^~~
      |                    operator""_xl
In file included from nearPD.cpp:4:
In file included from /data/gannet/ripley/R/test-clang/cpp11armadillo/include/armadillo.hpp:28:
In file included from /data/gannet/ripley/R/test-clang/cpp11armadillo/include/r_messages.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
      |                  ~~~~~~~~~~~^~~
      |                  operator""_nm
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/cpp11armadillo/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include   -fopenmp  -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c rcm.cpp -o rcm.o
In file included from rcm.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/cpp11armadillo/include/armadillo.hpp:28:
In file included from /data/gannet/ripley/R/test-clang/cpp11armadillo/include/r_messages.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:3:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
      |                    ~~~~~~~~~~~^~~
      |                    operator""_xl
In file included from rcm.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/cpp11armadillo/include/armadillo.hpp:28:
In file included from /data/gannet/ripley/R/test-clang/cpp11armadillo/include/r_messages.hpp:3:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
      |                  ~~~~~~~~~~~^~~
      |                  operator""_nm
2 warnings generated.
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o lotri.so asLotriMat.o lotriBounds.o lotriLstToMat.o lotriNest.o lotriProp.o matlist.o nearPD.o rcm.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/lotri/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/lotri/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/lotri/src'
installing to /data/gannet/ripley/R/packages/tests-clang/lotri.Rcheck/00LOCK-lotri/00new/lotri/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lotri)