* installing *source* package ‘localScore’ ...
** this is package ‘localScore’ version ‘2.0.1’
** package ‘localScore’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 20.1.0-rc2’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/localScore/src'
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c function_wrapper.cpp -o function_wrapper.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c localScoreC.cpp -o localScoreC.o
localScoreC.cpp:93:7: warning: unused variable 'fixNoScoreMatrixSize' [-Wunused-variable]
   93 |   int fixNoScoreMatrixSize = (numberOfLocalScores==0) ? 1 : 0; // needed to create finalScores Matrix in case of no localScore found
      |       ^~~~~~~~~~~~~~~~~~~~
1 warning generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c pValueMethods.cpp -o pValueMethods.o
pValueMethods.cpp:512:16: warning: unused variable 'i' [-Wunused-variable]
  512 |   unsigned int i ;
      |                ^
pValueMethods.cpp:629:10: warning: unused variable 'K_plus' [-Wunused-variable]
  629 |   double K_plus = karlin_parameters[1] ;
      |          ^~~~~~
pValueMethods.cpp:713:10: warning: unused variable 'R' [-Wunused-variable]
  713 |   double R = roots_separated.mod_smaller_one[0].real();
      |          ^
3 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o localScore.so RcppExports.o function_wrapper.o localScoreC.o pValueMethods.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/localScore/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/localScore/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/localScore/src'
installing to /data/gannet/ripley/R/packages/tests-clang/localScore.Rcheck/00LOCK-localScore/00new/localScore/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (localScore)