• using R Under development (unstable) (2025-02-15 r87725)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 19.1.7     flang-new version 19.1.7
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘lmeInfo/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘lmeInfo’ version ‘0.3.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘lmeInfo’ can be installed ... [6s/13s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [13s/32s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [8s/23s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [4m/12m] ERROR   Running ‘testthat.R’ [4m/12m] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > if (requireNamespace("testthat")) {   + library(testthat)   + library(lmeInfo)   +   + test_check("lmeInfo")   + }   Loading required namespace: testthat   [ FAIL 8 | WARN 6 | SKIP 18 | PASS 1091 ]      ══ Skipped tests (18) ══════════════════════════════════════════════════════════   • On CRAN (18): 'test-against-merDeriv.R:92:3',     'test-against-merDeriv.R:156:3', 'test-equivalent-pdClasses.R:22:3',     'test-equivalent-pdClasses.R:93:3', 'test-multivariate-models.R:100:3',     'test-multivariate-models.R:112:3', 'test-multivariate-models.R:124:3',     'test-multivariate-models.R:136:3', 'test-multivariate-models.R:149:3',     'test-multivariate-models.R:161:3', 'test-separate-random-effects.R:110:3',     'test-three-level-models.R:114:3', 'test-three-level-models.R:137:3',     'test-three-level-models.R:177:3', 'test-three-level-models.R:217:3',     'test-two-level-models.R:180:3', 'test-two-level-models.R:198:3',     'test-variance-structures.R:3:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-against-merDeriv.R:42:3'): lmeInfo results comparable to merDeriv for sleepstudy data, estimated by FML. ──   `sigma_sq_lme4_FML` not equal to vc_FML$sigma_sq.   1/1 mismatches   [1] 587 - 655 == -68.2   ── Failure ('test-against-merDeriv.R:43:3'): lmeInfo results comparable to merDeriv for sleepstudy data, estimated by FML. ──   `Tau_lme4_FML` not equal to vc_FML$Tau$Subject.   3/3 mismatches (average diff: 195)   [1] 587 - 565.5 == 21.2   [2] 0 - 11.1 == -11.1   [3] 587 - 32.7 == 554.1   ── Failure ('test-against-merDeriv.R:45:3'): lmeInfo results comparable to merDeriv for sleepstudy data, estimated by FML. ──   as.matrix(vcov_merDeriv_FML[1:2, 1:2]) not equal to vcov(sleep_nlme_FML).   4/4 mismatches (average diff: 7.92)   [1] 43.86 - 43.99 == -0.128   [2] -1.78 - -1.37 == -0.408   [3] -1.78 - -1.37 == -0.408   [4] 32.99 - 2.26 == 30.736   ── Failure ('test-against-merDeriv.R:48:3'): lmeInfo results comparable to merDeriv for sleepstudy data, estimated by FML. ──   as.matrix(vcov_merDeriv_FML[3:6, 3:6]) not equal to `vcov_lmeInfo_FML`.   16/16 mismatches (average diff: 4455)   [1] 69819 - 70364.6 == -546.0   [2] -2897 - -2282.3 == -615.1   [3] 134 - 92.6 == 41.3   [4] -1652 - -2058.1 == 406.2   [5] -2897 - -2282.3 == -615.1   [6] 26117 - 1838.3 == 24278.8   [7] -2115 - -115.3 == -1999.7   [8] 261 - 325.0 == -64.1   [9] 134 - 92.6 == 41.3   ...   ── Failure ('test-against-merDeriv.R:77:3'): lmeInfo results comparable to merDeriv for sleepstudy data, estimated by REML. ──   `sigma_sq_lme4_REML` not equal to vc_REML$sigma_sq.   1/1 mismatches   [1] 593 - 655 == -61.6   ── Failure ('test-against-merDeriv.R:78:3'): lmeInfo results comparable to merDeriv for sleepstudy data, estimated by REML. ──   `Tau_lme4_REML` not equal to vc_REML$Tau$Subject.   3/3 mismatches (average diff: 196)   [1] 593 - 612.08 == -18.73   [2] 0 - 9.61 == -9.61   [3] 593 - 35.07 == 558.27   ── Failure ('test-against-merDeriv.R:80:3'): lmeInfo results comparable to merDeriv for sleepstudy data, estimated by REML. ──   as.matrix(vcov_merDeriv_REML[1:2, 1:2]) not equal to vcov(sleep_nlme_REML).   4/4 mismatches (average diff: 8.47)   [1] 44.4 - 46.57 == -2.223   [2] -1.8 - -1.45 == -0.347   [3] -1.8 - -1.45 == -0.347   [4] 33.4 - 2.39 == 30.974   ── Failure ('test-against-merDeriv.R:83:3'): lmeInfo results comparable to merDeriv for sleepstudy data, estimated by REML. ──   as.matrix(vcov_merDeriv_REML[3:6, 3:6]) not equal to `vcov_lmeInfo_REML`.   16/16 mismatches (average diff: 5210)   [1] 75562 - 83393 == -7831.7   [2] -3132 - -2688 == -443.6   [3] 144 - 105 == 38.5   [4] -1689 - -2058 == 368.9   [5] -3132 - -2688 == -443.6   [6] 28277 - 2179 == 26098.6   [7] -2290 - -136 == -2153.7   [8] 267 - 325 == -58.2   [9] 144 - 105 == 38.5   ...      [ FAIL 8 | WARN 6 | SKIP 18 | PASS 1091 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... OK
• checking PDF version of manual ... [7s/18s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR