* installing *source* package ‘leidenbase’ ...
** package ‘leidenbase’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... /usr/local/clang19/bin/clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether /usr/local/clang19/bin/clang accepts -g... yes
checking for /usr/local/clang19/bin/clang option to enable C11 features... none needed
checking whether the compiler supports GNU C++... yes
checking whether /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 accepts -g... yes
checking for /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 option to enable C++11 features... none needed
checking whether the compiler supports GNU Fortran... no
checking whether /usr/local/clang19/bin/flang-new accepts -g... yes
checking for expm1... yes
checking for fmin... yes
checking for finite... yes
checking for log2... yes
checking for log1p... yes
checking for rint... yes
checking for rintf... yes
checking for round... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for _stricmp... no
checking for strdup... yes
checking for isfinite... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for sys/times.h... yes
checking for net/if.h... yes
checking for netinet/in.h... yes
checking for net/if_dl.h... no
checking for sys/sockio.h... no
checking for sys/un.h... yes
checking for sys/socket.h... yes
checking for sys/ioctl.h... yes
checking for sys/time.h... yes
checking for sys/file.h... yes
checking for struct sockaddr.sa_len... no
checking for xml2-config... /usr/bin/xml2-config
checking for xmlSAXUserParseFile in -lxml2... yes
checking for libxml/parser.h... yes
checking for __gmpz_add in -lgmp... yes
checking for gmp.h... yes
checking how to run the C++ preprocessor... /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for glp_read_mps in -lglpk... yes
checking for glpk.h... yes
configure: creating ./config.status
config.status: creating src/Makevars.tmp
config.status: creating src/Makevars
config.status: creating src/config.h
*** Compiler settings used:
CC=/usr/local/clang19/bin/clang
LD=
CFLAGS=-O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3
CPPFLAGS=-isystem /usr/local/clang19/include -I/usr/local/clang/include
CXX=/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++11
CXXFLAGS=-O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3
LDFLAGS=-L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64
LIBS=
** libs
using C++ compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/leidenbase/src'
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/centrality/betweenness.c -o core/centrality/betweenness.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/centrality/centrality_other.c -o core/centrality/centrality_other.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/centrality/centralization.c -o core/centrality/centralization.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/centrality/closeness.c -o core/centrality/closeness.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/centrality/coreness.c -o core/centrality/coreness.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/centrality/prpack.cpp -o core/centrality/prpack.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/centrality/prpack/prpack_base_graph.cpp -o core/centrality/prpack/prpack_base_graph.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/centrality/prpack/prpack_igraph_graph.cpp -o core/centrality/prpack/prpack_igraph_graph.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/centrality/prpack/prpack_preprocessed_ge_graph.cpp -o core/centrality/prpack/prpack_preprocessed_ge_graph.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/centrality/prpack/prpack_preprocessed_gs_graph.cpp -o core/centrality/prpack/prpack_preprocessed_gs_graph.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/centrality/prpack/prpack_preprocessed_scc_graph.cpp -o core/centrality/prpack/prpack_preprocessed_scc_graph.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/centrality/prpack/prpack_preprocessed_schur_graph.cpp -o core/centrality/prpack/prpack_preprocessed_schur_graph.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/centrality/prpack/prpack_result.cpp -o core/centrality/prpack/prpack_result.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/centrality/prpack/prpack_solver.cpp -o core/centrality/prpack/prpack_solver.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/centrality/prpack/prpack_utils.cpp -o core/centrality/prpack/prpack_utils.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/cliques/cliquer/cliquer.c -o core/cliques/cliquer/cliquer.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/cliques/cliquer/cliquer_graph.c -o core/cliques/cliquer/cliquer_graph.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/cliques/cliquer/reorder.c -o core/cliques/cliquer/reorder.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/cliques/cliquer_wrapper.c -o core/cliques/cliquer_wrapper.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/cliques/cliques.c -o core/cliques/cliques.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/cliques/glet.c -o core/cliques/glet.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/cliques/maximal_cliques.c -o core/cliques/maximal_cliques.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/community/community_misc.c -o core/community/community_misc.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/community/edge_betweenness.c -o core/community/edge_betweenness.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/community/fast_modularity.c -o core/community/fast_modularity.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/community/fluid.c -o core/community/fluid.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/community/infomap/infomap.cc -o core/community/infomap/infomap.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/community/infomap/infomap_FlowGraph.cc -o core/community/infomap/infomap_FlowGraph.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/community/infomap/infomap_Greedy.cc -o core/community/infomap/infomap_Greedy.o
core/community/infomap/infomap.cc:170:17: warning: variable 'Nloops' set but not used [-Wunused-but-set-variable]
170 | int Nloops = 0;
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/community/infomap/infomap_Node.cc -o core/community/infomap/infomap_Node.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/community/label_propagation.c -o core/community/label_propagation.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/community/leading_eigenvector.c -o core/community/leading_eigenvector.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/community/leiden.c -o core/community/leiden.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/community/louvain.c -o core/community/louvain.o
core/community/louvain.c:343:9: warning: variable 'pass' set but not used [-Wunused-but-set-variable]
343 | int pass;
| ^
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/community/modularity.c -o core/community/modularity.o
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/community/optimal_modularity.c -o core/community/optimal_modularity.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/community/spinglass/NetDataTypes.cpp -o core/community/spinglass/NetDataTypes.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/community/spinglass/NetRoutines.cpp -o core/community/spinglass/NetRoutines.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/community/spinglass/clustertool.cpp -o core/community/spinglass/clustertool.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/community/spinglass/pottsmodel_2.cpp -o core/community/spinglass/pottsmodel_2.o
core/community/spinglass/pottsmodel_2.cpp:583:40: warning: variable 'problemcount' set but not used [-Wunused-but-set-variable]
583 | unsigned long changes, /*degree,*/ problemcount;
| ^
core/community/spinglass/pottsmodel_2.cpp:754:40: warning: variable 'problemcount' set but not used [-Wunused-but-set-variable]
754 | unsigned long changes, /*degree,*/ problemcount;
| ^
core/community/spinglass/pottsmodel_2.cpp:1778:28: warning: variable 'problemcount' set but not used [-Wunused-but-set-variable]
1778 | unsigned long changes, problemcount; //Number of changes and number of problems encountered
| ^
3 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/community/walktrap/walktrap.cpp -o core/community/walktrap/walktrap.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/community/walktrap/walktrap_communities.cpp -o core/community/walktrap/walktrap_communities.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/community/walktrap/walktrap_graph.cpp -o core/community/walktrap/walktrap_graph.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/community/walktrap/walktrap_heap.cpp -o core/community/walktrap/walktrap_heap.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/connectivity/cohesive_blocks.c -o core/connectivity/cohesive_blocks.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/connectivity/components.c -o core/connectivity/components.o
core/connectivity/components.c:684:14: warning: variable 'act_cluster_size' set but not used [-Wunused-but-set-variable]
684 | long int act_cluster_size;
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/connectivity/separators.c -o core/connectivity/separators.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/constructors/adjacency.c -o core/constructors/adjacency.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/constructors/atlas.c -o core/constructors/atlas.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/constructors/basic_constructors.c -o core/constructors/basic_constructors.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/constructors/de_bruijn.c -o core/constructors/de_bruijn.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/constructors/famous.c -o core/constructors/famous.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/constructors/full.c -o core/constructors/full.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/constructors/kautz.c -o core/constructors/kautz.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/constructors/lcf.c -o core/constructors/lcf.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/constructors/linegraph.c -o core/constructors/linegraph.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/constructors/prufer.c -o core/constructors/prufer.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/constructors/regular.c -o core/constructors/regular.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/array.c -o core/core/array.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/buckets.c -o core/core/buckets.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/cutheap.c -o core/core/cutheap.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/dqueue.c -o core/core/dqueue.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/error.c -o core/core/error.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/estack.c -o core/core/estack.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/fixed_vectorlist.c -o core/core/fixed_vectorlist.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/grid.c -o core/core/grid.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/heap.c -o core/core/heap.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/indheap.c -o core/core/indheap.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/interruption.c -o core/core/interruption.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/marked_queue.c -o core/core/marked_queue.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/matrix.c -o core/core/matrix.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/memory.c -o core/core/memory.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/printing.c -o core/core/printing.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/progress.c -o core/core/progress.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/psumtree.c -o core/core/psumtree.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/set.c -o core/core/set.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/sparsemat.c -o core/core/sparsemat.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/spmatrix.c -o core/core/spmatrix.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/stack.c -o core/core/stack.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/statusbar.c -o core/core/statusbar.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/strvector.c -o core/core/strvector.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/trie.c -o core/core/trie.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/vector.c -o core/core/vector.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/core/vector_ptr.c -o core/core/vector_ptr.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/flow/flow.c -o core/flow/flow.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/flow/st-cuts.c -o core/flow/st-cuts.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/barabasi.c -o core/games/barabasi.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/callaway_traits.c -o core/games/callaway_traits.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/citations.c -o core/games/citations.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/correlated.c -o core/games/correlated.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/degree_sequence.c -o core/games/degree_sequence.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/games/degree_sequence_vl/gengraph_box_list.cpp -o core/games/degree_sequence_vl/gengraph_box_list.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/games/degree_sequence_vl/gengraph_degree_sequence.cpp -o core/games/degree_sequence_vl/gengraph_degree_sequence.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp -o core/games/degree_sequence_vl/gengraph_graph_molloy_hash.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/games/degree_sequence_vl/gengraph_graph_molloy_optimized.cpp -o core/games/degree_sequence_vl/gengraph_graph_molloy_optimized.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/games/degree_sequence_vl/gengraph_mr-connected.cpp -o core/games/degree_sequence_vl/gengraph_mr-connected.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/games/degree_sequence_vl/gengraph_powerlaw.cpp -o core/games/degree_sequence_vl/gengraph_powerlaw.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/games/degree_sequence_vl/gengraph_random.cpp -o core/games/degree_sequence_vl/gengraph_random.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/dotproduct.c -o core/games/dotproduct.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/erdos_renyi.c -o core/games/erdos_renyi.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/establishment.c -o core/games/establishment.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/forestfire.c -o core/games/forestfire.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/grg.c -o core/games/grg.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/growing_random.c -o core/games/growing_random.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/islands.c -o core/games/islands.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/k_regular.c -o core/games/k_regular.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/preference.c -o core/games/preference.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/recent_degree.c -o core/games/recent_degree.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/sbm.c -o core/games/sbm.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/static_fitness.c -o core/games/static_fitness.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/tree.c -o core/games/tree.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/games/watts_strogatz.c -o core/games/watts_strogatz.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/graph/adjlist.c -o core/graph/adjlist.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/graph/attributes.c -o core/graph/attributes.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/graph/basic_query.c -o core/graph/basic_query.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/graph/cattributes.c -o core/graph/cattributes.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/graph/iterators.c -o core/graph/iterators.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/graph/type_indexededgelist.c -o core/graph/type_indexededgelist.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/graph/visitors.c -o core/graph/visitors.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/hrg/hrg.cc -o core/hrg/hrg.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/hrg/hrg_types.cc -o core/hrg/hrg_types.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/internal/glpk_support.c -o core/internal/glpk_support.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/internal/hacks.c -o core/internal/hacks.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/internal/lsap.c -o core/internal/lsap.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/internal/qsort.c -o core/internal/qsort.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/internal/qsort_r.c -o core/internal/qsort_r.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/internal/zeroin.c -o core/internal/zeroin.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/dimacs.c -o core/io/dimacs.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/dl-lexer.c -o core/io/dl-lexer.o
src/core/io/dl-lexer.l:58:9: warning: 'fprintf' macro redefined [-Wmacro-redefined]
58 | #define fprintf(file, msg, ...) (1)
| ^
/usr/include/bits/stdio2.h:91:11: note: previous definition is here
91 | # define fprintf(stream, ...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/dl-parser.c -o core/io/dl-parser.o
yy.tab.c:1379:9: warning: variable 'igraph_dl_yynerrs' set but not used [-Wunused-but-set-variable]
1379 | int yynerrs = 0;
| ^
core/io/dl-parser.c:72:25: note: expanded from macro 'yynerrs'
72 | #define yynerrs igraph_dl_yynerrs
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/dl.c -o core/io/dl.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/dot.c -o core/io/dot.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/edgelist.c -o core/io/edgelist.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/gml-lexer.c -o core/io/gml-lexer.o
src/core/io/gml-lexer.l:57:9: warning: 'fprintf' macro redefined [-Wmacro-redefined]
57 | #define fprintf(file, msg, ...) (1)
| ^
/usr/include/bits/stdio2.h:91:11: note: previous definition is here
91 | # define fprintf(stream, ...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/gml-parser.c -o core/io/gml-parser.o
yy.tab.c:1297:9: warning: variable 'igraph_gml_yynerrs' set but not used [-Wunused-but-set-variable]
1297 | int yynerrs = 0;
| ^
core/io/gml-parser.c:72:25: note: expanded from macro 'yynerrs'
72 | #define yynerrs igraph_gml_yynerrs
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/gml-tree.c -o core/io/gml-tree.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/gml.c -o core/io/gml.o
core/io/gml.c:514:9: warning: variable 'no' set but not used [-Wunused-but-set-variable]
514 | int no = 1;
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/graphdb.c -o core/io/graphdb.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/graphml.c -o core/io/graphml.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/leda.c -o core/io/leda.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/lgl-lexer.c -o core/io/lgl-lexer.o
src/core/io/lgl-lexer.l:57:9: warning: 'fprintf' macro redefined [-Wmacro-redefined]
57 | #define fprintf(file, msg, ...) (1)
| ^
/usr/include/bits/stdio2.h:91:11: note: previous definition is here
91 | # define fprintf(stream, ...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/lgl-parser.c -o core/io/lgl-parser.o
yy.tab.c:1248:9: warning: variable 'igraph_lgl_yynerrs' set but not used [-Wunused-but-set-variable]
1248 | int yynerrs = 0;
| ^
core/io/lgl-parser.c:72:25: note: expanded from macro 'yynerrs'
72 | #define yynerrs igraph_lgl_yynerrs
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/lgl.c -o core/io/lgl.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/ncol-lexer.c -o core/io/ncol-lexer.o
src/core/io/ncol-lexer.l:57:9: warning: 'fprintf' macro redefined [-Wmacro-redefined]
57 | #define fprintf(file, msg, ...) (1)
| ^
/usr/include/bits/stdio2.h:91:11: note: previous definition is here
91 | # define fprintf(stream, ...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/ncol-parser.c -o core/io/ncol-parser.o
yy.tab.c:1241:9: warning: variable 'igraph_ncol_yynerrs' set but not used [-Wunused-but-set-variable]
1241 | int yynerrs = 0;
| ^
core/io/ncol-parser.c:72:25: note: expanded from macro 'yynerrs'
72 | #define yynerrs igraph_ncol_yynerrs
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/ncol.c -o core/io/ncol.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/pajek-lexer.c -o core/io/pajek-lexer.o
src/core/io/pajek-lexer.l:57:9: warning: 'fprintf' macro redefined [-Wmacro-redefined]
57 | #define fprintf(file, msg, ...) (1)
| ^
/usr/include/bits/stdio2.h:91:11: note: previous definition is here
91 | # define fprintf(stream, ...) \
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/pajek-parser.c -o core/io/pajek-parser.o
yy.tab.c:1561:9: warning: variable 'igraph_pajek_yynerrs' set but not used [-Wunused-but-set-variable]
1561 | int yynerrs = 0;
| ^
core/io/pajek-parser.c:72:25: note: expanded from macro 'yynerrs'
72 | #define yynerrs igraph_pajek_yynerrs
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/io/pajek.c -o core/io/pajek.o
core/io/pajek.c:488:14: warning: variable 'notop' set but not used [-Wunused-but-set-variable]
488 | long int notop = 0, nobottom = 0;
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/isomorphism/bliss.cc -o core/isomorphism/bliss.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/isomorphism/bliss/defs.cc -o core/isomorphism/bliss/defs.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/isomorphism/bliss/graph.cc -o core/isomorphism/bliss/graph.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/isomorphism/bliss/heap.cc -o core/isomorphism/bliss/heap.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/isomorphism/bliss/orbit.cc -o core/isomorphism/bliss/orbit.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/isomorphism/bliss/partition.cc -o core/isomorphism/bliss/partition.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/isomorphism/bliss/uintseqhash.cc -o core/isomorphism/bliss/uintseqhash.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/isomorphism/bliss/utils.cc -o core/isomorphism/bliss/utils.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/isomorphism/isoclasses.c -o core/isomorphism/isoclasses.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/isomorphism/isomorphism_misc.c -o core/isomorphism/isomorphism_misc.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/isomorphism/lad.c -o core/isomorphism/lad.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/isomorphism/queries.c -o core/isomorphism/queries.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/isomorphism/vf2.c -o core/isomorphism/vf2.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/layout/circular.c -o core/layout/circular.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/layout/davidson_harel.c -o core/layout/davidson_harel.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/layout/drl/DensityGrid.cpp -o core/layout/drl/DensityGrid.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/layout/drl/DensityGrid_3d.cpp -o core/layout/drl/DensityGrid_3d.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/layout/drl/drl_graph.cpp -o core/layout/drl/drl_graph.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/layout/drl/drl_graph_3d.cpp -o core/layout/drl/drl_graph_3d.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/layout/drl/drl_layout.cpp -o core/layout/drl/drl_layout.o
core/layout/drl/drl_graph.cpp:1292:9: warning: variable 'count_iter' set but not used [-Wunused-but-set-variable]
1292 | int count_iter = 0;
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/layout/drl/drl_layout_3d.cpp -o core/layout/drl/drl_layout_3d.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/layout/drl/drl_parse.cpp -o core/layout/drl/drl_parse.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/layout/fruchterman_reingold.c -o core/layout/fruchterman_reingold.o
core/layout/drl/drl_graph_3d.cpp:858:9: warning: variable 'count_iter' set but not used [-Wunused-but-set-variable]
858 | int count_iter = 0;
| ^
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/layout/gem.c -o core/layout/gem.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/layout/graphopt.c -o core/layout/graphopt.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/layout/kamada_kawai.c -o core/layout/kamada_kawai.o
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/layout/large_graph.c -o core/layout/large_graph.o
core/layout/large_graph.c:174:18: warning: variable 'pairs' set but not used [-Wunused-but-set-variable]
174 | long int pairs;
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/layout/layout_bipartite.c -o core/layout/layout_bipartite.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/layout/layout_grid.c -o core/layout/layout_grid.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/layout/layout_random.c -o core/layout/layout_random.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/layout/mds.c -o core/layout/mds.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/layout/merge_dla.c -o core/layout/merge_dla.o
core/layout/merge_dla.c:263:14: warning: variable 'steps' set but not used [-Wunused-but-set-variable]
263 | long int steps = 0;
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/layout/merge_grid.c -o core/layout/merge_grid.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/layout/reingold_tilford.c -o core/layout/reingold_tilford.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/layout/sugiyama.c -o core/layout/sugiyama.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/linalg/arpack.c -o core/linalg/arpack.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/linalg/blas.c -o core/linalg/blas.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/linalg/eigen.c -o core/linalg/eigen.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/linalg/lapack.c -o core/linalg/lapack.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/math/bfgs.c -o core/math/bfgs.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/math/complex.c -o core/math/complex.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/math/utils.c -o core/math/utils.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/bipartite.c -o core/misc/bipartite.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/chordality.c -o core/misc/chordality.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/cocitation.c -o core/misc/cocitation.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/coloring.c -o core/misc/coloring.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/conversion.c -o core/misc/conversion.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c core/misc/degree_sequence.cpp -o core/misc/degree_sequence.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/embedding.c -o core/misc/embedding.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/feedback_arc_set.c -o core/misc/feedback_arc_set.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/graphicality.c -o core/misc/graphicality.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/matching.c -o core/misc/matching.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/microscopic_update.c -o core/misc/microscopic_update.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/mixing.c -o core/misc/mixing.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/motifs.c -o core/misc/motifs.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/other.c -o core/misc/other.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/scan.c -o core/misc/scan.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/sir.c -o core/misc/sir.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/misc/spanning_trees.c -o core/misc/spanning_trees.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/operators/add_edge.c -o core/operators/add_edge.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/operators/complementer.c -o core/operators/complementer.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/operators/compose.c -o core/operators/compose.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/operators/connect_neighborhood.c -o core/operators/connect_neighborhood.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/operators/contract.c -o core/operators/contract.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/operators/difference.c -o core/operators/difference.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/operators/disjoint_union.c -o core/operators/disjoint_union.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/operators/intersection.c -o core/operators/intersection.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/operators/misc_internal.c -o core/operators/misc_internal.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/operators/permute.c -o core/operators/permute.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/operators/rewire.c -o core/operators/rewire.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/operators/rewire_edges.c -o core/operators/rewire_edges.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/operators/simplify.c -o core/operators/simplify.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/operators/subgraph.c -o core/operators/subgraph.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/operators/union.c -o core/operators/union.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/paths/all_shortest_paths.c -o core/paths/all_shortest_paths.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/paths/bellman_ford.c -o core/paths/bellman_ford.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/paths/dijkstra.c -o core/paths/dijkstra.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/paths/distances.c -o core/paths/distances.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/paths/eulerian.c -o core/paths/eulerian.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/paths/histogram.c -o core/paths/histogram.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/paths/johnson.c -o core/paths/johnson.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/paths/random_walk.c -o core/paths/random_walk.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/paths/shortest_paths.c -o core/paths/shortest_paths.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/paths/simple_paths.c -o core/paths/simple_paths.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/paths/unweighted.c -o core/paths/unweighted.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/properties/basic_properties.c -o core/properties/basic_properties.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/properties/constraint.c -o core/properties/constraint.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/properties/convergence_degree.c -o core/properties/convergence_degree.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/properties/dag.c -o core/properties/dag.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/properties/degrees.c -o core/properties/degrees.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/properties/girth.c -o core/properties/girth.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/properties/loops.c -o core/properties/loops.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/properties/multiplicity.c -o core/properties/multiplicity.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/properties/neighborhood.c -o core/properties/neighborhood.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/properties/spectral.c -o core/properties/spectral.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/properties/trees.c -o core/properties/trees.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/properties/triangles.c -o core/properties/triangles.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/random/random.c -o core/random/random.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/scg/scg.c -o core/scg/scg.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/scg/scg_approximate_methods.c -o core/scg/scg_approximate_methods.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/scg/scg_exact_scg.c -o core/scg/scg_exact_scg.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/scg/scg_kmeans.c -o core/scg/scg_kmeans.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/scg/scg_optimal_method.c -o core/scg/scg_optimal_method.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/scg/scg_utils.c -o core/scg/scg_utils.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c core/version.c -o core/version.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_add.c -o vendor/cs/cs_add.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_amd.c -o vendor/cs/cs_amd.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_chol.c -o vendor/cs/cs_chol.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_cholsol.c -o vendor/cs/cs_cholsol.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_compress.c -o vendor/cs/cs_compress.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_counts.c -o vendor/cs/cs_counts.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_cumsum.c -o vendor/cs/cs_cumsum.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_dfs.c -o vendor/cs/cs_dfs.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_dmperm.c -o vendor/cs/cs_dmperm.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_droptol.c -o vendor/cs/cs_droptol.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_dropzeros.c -o vendor/cs/cs_dropzeros.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_dupl.c -o vendor/cs/cs_dupl.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_entry.c -o vendor/cs/cs_entry.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_ereach.c -o vendor/cs/cs_ereach.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_etree.c -o vendor/cs/cs_etree.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_fkeep.c -o vendor/cs/cs_fkeep.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_gaxpy.c -o vendor/cs/cs_gaxpy.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_happly.c -o vendor/cs/cs_happly.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_house.c -o vendor/cs/cs_house.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_ipvec.c -o vendor/cs/cs_ipvec.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_leaf.c -o vendor/cs/cs_leaf.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_load.c -o vendor/cs/cs_load.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_lsolve.c -o vendor/cs/cs_lsolve.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_ltsolve.c -o vendor/cs/cs_ltsolve.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_lu.c -o vendor/cs/cs_lu.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_lusol.c -o vendor/cs/cs_lusol.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_malloc.c -o vendor/cs/cs_malloc.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_maxtrans.c -o vendor/cs/cs_maxtrans.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_multiply.c -o vendor/cs/cs_multiply.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_norm.c -o vendor/cs/cs_norm.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_permute.c -o vendor/cs/cs_permute.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_pinv.c -o vendor/cs/cs_pinv.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_post.c -o vendor/cs/cs_post.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_print.c -o vendor/cs/cs_print.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_pvec.c -o vendor/cs/cs_pvec.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_qr.c -o vendor/cs/cs_qr.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_qrsol.c -o vendor/cs/cs_qrsol.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_randperm.c -o vendor/cs/cs_randperm.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_reach.c -o vendor/cs/cs_reach.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_scatter.c -o vendor/cs/cs_scatter.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_scc.c -o vendor/cs/cs_scc.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_schol.c -o vendor/cs/cs_schol.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_spsolve.c -o vendor/cs/cs_spsolve.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_sqr.c -o vendor/cs/cs_sqr.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_symperm.c -o vendor/cs/cs_symperm.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_tdfs.c -o vendor/cs/cs_tdfs.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_transpose.c -o vendor/cs/cs_transpose.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_updown.c -o vendor/cs/cs_updown.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_usolve.c -o vendor/cs/cs_usolve.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_util.c -o vendor/cs/cs_util.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/cs/cs_utsolve.c -o vendor/cs/cs_utsolve.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/mini-gmp/mini-gmp.c -o vendor/mini-gmp/mini-gmp.o
vendor/mini-gmp/mini-gmp.c:1128:2: warning: unused variable '__cy' [-Wunused-variable]
1128 | gmp_assert_nocarry (mpn_rshift (np, np, dn, shift));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/mini-gmp/mini-gmp.c:93:15: note: expanded from macro 'gmp_assert_nocarry'
93 | mp_limb_t __cy = (x); \
| ^~~~
vendor/mini-gmp/mini-gmp.c:1145:7: warning: unused variable '__cy' [-Wunused-variable]
1145 | gmp_assert_nocarry (mpn_lshift (tp, dp, dn, inv.shift));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/mini-gmp/mini-gmp.c:93:15: note: expanded from macro 'gmp_assert_nocarry'
93 | mp_limb_t __cy = (x); \
| ^~~~
vendor/mini-gmp/mini-gmp.c:1976:7: warning: unused variable '__cy' [-Wunused-variable]
1976 | gmp_assert_nocarry (mpn_sub (rp, a->_mp_d, an, b->_mp_d, bn));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/mini-gmp/mini-gmp.c:93:15: note: expanded from macro 'gmp_assert_nocarry'
93 | mp_limb_t __cy = (x); \
| ^~~~
vendor/mini-gmp/mini-gmp.c:1982:7: warning: unused variable '__cy' [-Wunused-variable]
1982 | gmp_assert_nocarry (mpn_sub (rp, b->_mp_d, bn, a->_mp_d, an));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/mini-gmp/mini-gmp.c:93:15: note: expanded from macro 'gmp_assert_nocarry'
93 | mp_limb_t __cy = (x); \
| ^~~~
vendor/mini-gmp/mini-gmp.c:2413:4: warning: unused variable '__cy' [-Wunused-variable]
2413 | gmp_assert_nocarry (! mpn_neg (rp, u->_mp_d, un));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/mini-gmp/mini-gmp.c:93:15: note: expanded from macro 'gmp_assert_nocarry'
93 | mp_limb_t __cy = (x); \
| ^~~~
vendor/mini-gmp/mini-gmp.c:2491:3: warning: unused variable '__cy' [-Wunused-variable]
2491 | gmp_assert_nocarry (mpz_div_qr (q, NULL, n, d, GMP_DIV_TRUNC));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/mini-gmp/mini-gmp.c:93:15: note: expanded from macro 'gmp_assert_nocarry'
93 | mp_limb_t __cy = (x); \
| ^~~~
vendor/mini-gmp/mini-gmp.c:2617:3: warning: unused variable '__cy' [-Wunused-variable]
2617 | gmp_assert_nocarry (mpz_div_qr_ui (q, NULL, n, d, GMP_DIV_TRUNC));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/mini-gmp/mini-gmp.c:93:15: note: expanded from macro 'gmp_assert_nocarry'
93 | mp_limb_t __cy = (x); \
| ^~~~
vendor/mini-gmp/mini-gmp.c:3082:7: warning: unused variable '__cy' [-Wunused-variable]
3082 | gmp_assert_nocarry (mpn_lshift (tp, mp, mn, shift));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/mini-gmp/mini-gmp.c:93:15: note: expanded from macro 'gmp_assert_nocarry'
93 | mp_limb_t __cy = (x); \
| ^~~~
vendor/mini-gmp/mini-gmp.c:3111:4: warning: unused variable '__cy' [-Wunused-variable]
3111 | gmp_assert_nocarry (mpn_sub (bp, mp, mn, bp, bn));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/mini-gmp/mini-gmp.c:93:15: note: expanded from macro 'gmp_assert_nocarry'
93 | mp_limb_t __cy = (x); \
| ^~~~
vendor/mini-gmp/mini-gmp.c:3723:3: warning: unused variable '__cy' [-Wunused-variable]
3723 | gmp_assert_nocarry (mpn_sub_1 (dp + limb_index, dp + limb_index,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3724 | dn - limb_index, bit));
| ~~~~~~~~~~~~~~~~~~~~~~
vendor/mini-gmp/mini-gmp.c:93:15: note: expanded from macro 'gmp_assert_nocarry'
93 | mp_limb_t __cy = (x); \
| ^~~~
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/plfit/gss.c -o vendor/plfit/gss.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/plfit/hzeta.c -o vendor/plfit/hzeta.o
10 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/plfit/kolmogorov.c -o vendor/plfit/kolmogorov.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/plfit/lbfgs.c -o vendor/plfit/lbfgs.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/plfit/mt.c -o vendor/plfit/mt.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/plfit/options.c -o vendor/plfit/options.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/plfit/platform.c -o vendor/plfit/platform.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/plfit/plfit.c -o vendor/plfit/plfit.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/plfit/plfit_error.c -o vendor/plfit/plfit_error.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/plfit/rbinom.c -o vendor/plfit/rbinom.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/plfit/sampling.c -o vendor/plfit/sampling.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dgetv0.f -o vendor/arpack/dgetv0.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dlaqrb.f -o vendor/arpack/dlaqrb.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dmout.f -o vendor/arpack/dmout.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dnaitr.f -o vendor/arpack/dnaitr.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dnapps.f -o vendor/arpack/dnapps.o
./vendor/arpack/dnapps.f:342:19: warning: Reference to the procedure 'igraphdvout' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call igraphdvout (logfil, 1, h(i+1,i), ndigit,
^
./vendor/arpack/dnapps.f:271:13: previous reference to 'igraphdvout'
call igraphdvout (logfil, 1, [sigmar], ndigit,
^
./vendor/arpack/dnapps.f:593:10: warning: Reference to the procedure 'dgemv' has an implicit interface that is distinct from another reference: incompatible dummy argument #10: incompatible dummy data object shapes
call dgemv ('N', n, kplusp-i+1, one, v, ldv,
^
./vendor/arpack/dnapps.f:584:11: previous reference to 'dgemv'
& call dgemv ('N', n, kplusp, one, v, ldv, q(1,kev+1), 1, zero,
^
./vendor/arpack/dnapps.f:624:10: warning: Reference to the procedure 'igraphdvout' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call igraphdvout (logfil, 1, q(kplusp,kev), ndigit,
^
./vendor/arpack/dnapps.f:271:13: previous reference to 'igraphdvout'
call igraphdvout (logfil, 1, [sigmar], ndigit,
^
./vendor/arpack/dnapps.f:626:10: warning: Reference to the procedure 'igraphdvout' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes
call igraphdvout (logfil, 1, h(kev+1,kev), ndigit,
^
./vendor/arpack/dnapps.f:271:13: previous reference to 'igraphdvout'
call igraphdvout (logfil, 1, [sigmar], ndigit,
^
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dnaup2.f -o vendor/arpack/dnaup2.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dnaupd.f -o vendor/arpack/dnaupd.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dnconv.f -o vendor/arpack/dnconv.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dneigh.f -o vendor/arpack/dneigh.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dneupd.f -o vendor/arpack/dneupd.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dngets.f -o vendor/arpack/dngets.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dsaitr.f -o vendor/arpack/dsaitr.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dsapps.f -o vendor/arpack/dsapps.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dsaup2.f -o vendor/arpack/dsaup2.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dsaupd.f -o vendor/arpack/dsaupd.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dsconv.f -o vendor/arpack/dsconv.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dseigt.f -o vendor/arpack/dseigt.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dsesrt.f -o vendor/arpack/dsesrt.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dseupd.f -o vendor/arpack/dseupd.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dsgets.f -o vendor/arpack/dsgets.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dsortc.f -o vendor/arpack/dsortc.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dsortr.f -o vendor/arpack/dsortr.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dstatn.f -o vendor/arpack/dstatn.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dstats.f -o vendor/arpack/dstats.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dstqrb.f -o vendor/arpack/dstqrb.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/dvout.f -o vendor/arpack/dvout.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/ivout.f -o vendor/arpack/ivout.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/second.f -o vendor/arpack/second.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c vendor/arpack/wrap.f -o vendor/arpack/wrap.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c vendor/simpleraytracer/Color.cpp -o vendor/simpleraytracer/Color.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c vendor/simpleraytracer/Light.cpp -o vendor/simpleraytracer/Light.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c vendor/simpleraytracer/Point.cpp -o vendor/simpleraytracer/Point.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c vendor/simpleraytracer/RIgraphRay.cpp -o vendor/simpleraytracer/RIgraphRay.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c vendor/simpleraytracer/Ray.cpp -o vendor/simpleraytracer/Ray.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c vendor/simpleraytracer/RayTracer.cpp -o vendor/simpleraytracer/RayTracer.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c vendor/simpleraytracer/RayVector.cpp -o vendor/simpleraytracer/RayVector.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c vendor/simpleraytracer/Shape.cpp -o vendor/simpleraytracer/Shape.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c vendor/simpleraytracer/Sphere.cpp -o vendor/simpleraytracer/Sphere.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c vendor/simpleraytracer/Triangle.cpp -o vendor/simpleraytracer/Triangle.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c vendor/simpleraytracer/unit_limiter.cpp -o vendor/simpleraytracer/unit_limiter.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/uuid/R.c -o vendor/uuid/R.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/uuid/clear.c -o vendor/uuid/clear.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/uuid/compare.c -o vendor/uuid/compare.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/uuid/copy.c -o vendor/uuid/copy.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/uuid/gen_uuid.c -o vendor/uuid/gen_uuid.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/uuid/isnull.c -o vendor/uuid/isnull.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/uuid/pack.c -o vendor/uuid/pack.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/uuid/parse.c -o vendor/uuid/parse.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/uuid/unpack.c -o vendor/uuid/unpack.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c vendor/uuid/unparse.c -o vendor/uuid/unparse.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c leidenalg/CPMVertexPartition.cpp -o leidenalg/CPMVertexPartition.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c leidenalg/GraphHelper.cpp -o leidenalg/GraphHelper.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c leidenalg/LinearResolutionParameterVertexPartition.cpp -o leidenalg/LinearResolutionParameterVertexPartition.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c leidenalg/ModularityVertexPartition.cpp -o leidenalg/ModularityVertexPartition.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c leidenalg/MutableVertexPartition.cpp -o leidenalg/MutableVertexPartition.o
leidenalg/GraphHelper.cpp:705:10: warning: variable 'total_collapsed_weight' set but not used [-Wunused-but-set-variable]
705 | double total_collapsed_weight = 0.0;
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c leidenalg/Optimiser.cpp -o leidenalg/Optimiser.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c leidenalg/RBConfigurationVertexPartition.cpp -o leidenalg/RBConfigurationVertexPartition.o
1 warning generated.
leidenalg/Optimiser.cpp:84:10: warning: variable 'q' set but not used [-Wunused-but-set-variable]
84 | double q = 0.0;
| ^
leidenalg/Optimiser.cpp:526:10: warning: variable 'nb_moves' set but not used [-Wunused-but-set-variable]
526 | size_t nb_moves = 0;
| ^
leidenalg/Optimiser.cpp:1012:10: warning: variable 'nb_moves' set but not used [-Wunused-but-set-variable]
1012 | size_t nb_moves = 0;
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c leidenalg/RBERVertexPartition.cpp -o leidenalg/RBERVertexPartition.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c leidenalg/ResolutionParameterVertexPartition.cpp -o leidenalg/ResolutionParameterVertexPartition.o
3 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c leidenalg/SignificanceVertexPartition.cpp -o leidenalg/SignificanceVertexPartition.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c leidenalg/SurpriseVertexPartition.cpp -o leidenalg/SurpriseVertexPartition.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c leidenbase/leidenFindPartition.cpp -o leidenbase/leidenFindPartition.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -isystem /usr/local/clang19/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c leidenbase/leidenFindPartitionR2C.cpp -o leidenbase/leidenFindPartitionR2C.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o leidenbase.so core/centrality/betweenness.o core/centrality/centrality_other.o core/centrality/centralization.o core/centrality/closeness.o core/centrality/coreness.o core/centrality/prpack.o core/centrality/prpack/prpack_base_graph.o core/centrality/prpack/prpack_igraph_graph.o core/centrality/prpack/prpack_preprocessed_ge_graph.o core/centrality/prpack/prpack_preprocessed_gs_graph.o core/centrality/prpack/prpack_preprocessed_scc_graph.o core/centrality/prpack/prpack_preprocessed_schur_graph.o core/centrality/prpack/prpack_result.o core/centrality/prpack/prpack_solver.o core/centrality/prpack/prpack_utils.o core/cliques/cliquer/cliquer.o core/cliques/cliquer/cliquer_graph.o core/cliques/cliquer/reorder.o core/cliques/cliquer_wrapper.o core/cliques/cliques.o core/cliques/glet.o core/cliques/maximal_cliques.o core/community/community_misc.o core/community/edge_betweenness.o core/community/fast_modularity.o core/community/fluid.o core/community/infomap/infomap.o core/community/infomap/infomap_FlowGraph.o core/community/infomap/infomap_Greedy.o core/community/infomap/infomap_Node.o core/community/label_propagation.o core/community/leading_eigenvector.o core/community/leiden.o core/community/louvain.o core/community/modularity.o core/community/optimal_modularity.o core/community/spinglass/NetDataTypes.o core/community/spinglass/NetRoutines.o core/community/spinglass/clustertool.o core/community/spinglass/pottsmodel_2.o core/community/walktrap/walktrap.o core/community/walktrap/walktrap_communities.o core/community/walktrap/walktrap_graph.o core/community/walktrap/walktrap_heap.o core/connectivity/cohesive_blocks.o core/connectivity/components.o core/connectivity/separators.o core/constructors/adjacency.o core/constructors/atlas.o core/constructors/basic_constructors.o core/constructors/de_bruijn.o core/constructors/famous.o core/constructors/full.o core/constructors/kautz.o core/constructors/lcf.o core/constructors/linegraph.o core/constructors/prufer.o core/constructors/regular.o core/core/array.o core/core/buckets.o core/core/cutheap.o core/core/dqueue.o core/core/error.o core/core/estack.o core/core/fixed_vectorlist.o core/core/grid.o core/core/heap.o core/core/indheap.o core/core/interruption.o core/core/marked_queue.o core/core/matrix.o core/core/memory.o core/core/printing.o core/core/progress.o core/core/psumtree.o core/core/set.o core/core/sparsemat.o core/core/spmatrix.o core/core/stack.o core/core/statusbar.o core/core/strvector.o core/core/trie.o core/core/vector.o core/core/vector_ptr.o core/flow/flow.o core/flow/st-cuts.o core/games/barabasi.o core/games/callaway_traits.o core/games/citations.o core/games/correlated.o core/games/degree_sequence.o core/games/degree_sequence_vl/gengraph_box_list.o core/games/degree_sequence_vl/gengraph_degree_sequence.o core/games/degree_sequence_vl/gengraph_graph_molloy_hash.o core/games/degree_sequence_vl/gengraph_graph_molloy_optimized.o core/games/degree_sequence_vl/gengraph_mr-connected.o core/games/degree_sequence_vl/gengraph_powerlaw.o core/games/degree_sequence_vl/gengraph_random.o core/games/dotproduct.o core/games/erdos_renyi.o core/games/establishment.o core/games/forestfire.o core/games/grg.o core/games/growing_random.o core/games/islands.o core/games/k_regular.o core/games/preference.o core/games/recent_degree.o core/games/sbm.o core/games/static_fitness.o core/games/tree.o core/games/watts_strogatz.o core/graph/adjlist.o core/graph/attributes.o core/graph/basic_query.o core/graph/cattributes.o core/graph/iterators.o core/graph/type_indexededgelist.o core/graph/visitors.o core/hrg/hrg.o core/hrg/hrg_types.o core/internal/glpk_support.o core/internal/hacks.o core/internal/lsap.o core/internal/qsort.o core/internal/qsort_r.o core/internal/zeroin.o core/io/dimacs.o core/io/dl-lexer.o core/io/dl-parser.o core/io/dl.o core/io/dot.o core/io/edgelist.o core/io/gml-lexer.o core/io/gml-parser.o core/io/gml-tree.o core/io/gml.o core/io/graphdb.o core/io/graphml.o core/io/leda.o core/io/lgl-lexer.o core/io/lgl-parser.o core/io/lgl.o core/io/ncol-lexer.o core/io/ncol-parser.o core/io/ncol.o core/io/pajek-lexer.o core/io/pajek-parser.o core/io/pajek.o core/isomorphism/bliss.o core/isomorphism/bliss/defs.o core/isomorphism/bliss/graph.o core/isomorphism/bliss/heap.o core/isomorphism/bliss/orbit.o core/isomorphism/bliss/partition.o core/isomorphism/bliss/uintseqhash.o core/isomorphism/bliss/utils.o core/isomorphism/isoclasses.o core/isomorphism/isomorphism_misc.o core/isomorphism/lad.o core/isomorphism/queries.o core/isomorphism/vf2.o core/layout/circular.o core/layout/davidson_harel.o core/layout/drl/DensityGrid.o core/layout/drl/DensityGrid_3d.o core/layout/drl/drl_graph.o core/layout/drl/drl_graph_3d.o core/layout/drl/drl_layout.o core/layout/drl/drl_layout_3d.o core/layout/drl/drl_parse.o core/layout/fruchterman_reingold.o core/layout/gem.o core/layout/graphopt.o core/layout/kamada_kawai.o core/layout/large_graph.o core/layout/layout_bipartite.o core/layout/layout_grid.o core/layout/layout_random.o core/layout/mds.o core/layout/merge_dla.o core/layout/merge_grid.o core/layout/reingold_tilford.o core/layout/sugiyama.o core/linalg/arpack.o core/linalg/blas.o core/linalg/eigen.o core/linalg/lapack.o core/math/bfgs.o core/math/complex.o core/math/utils.o core/misc/bipartite.o core/misc/chordality.o core/misc/cocitation.o core/misc/coloring.o core/misc/conversion.o core/misc/degree_sequence.o core/misc/embedding.o core/misc/feedback_arc_set.o core/misc/graphicality.o core/misc/matching.o core/misc/microscopic_update.o core/misc/mixing.o core/misc/motifs.o core/misc/other.o core/misc/scan.o core/misc/sir.o core/misc/spanning_trees.o core/operators/add_edge.o core/operators/complementer.o core/operators/compose.o core/operators/connect_neighborhood.o core/operators/contract.o core/operators/difference.o core/operators/disjoint_union.o core/operators/intersection.o core/operators/misc_internal.o core/operators/permute.o core/operators/rewire.o core/operators/rewire_edges.o core/operators/simplify.o core/operators/subgraph.o core/operators/union.o core/paths/all_shortest_paths.o core/paths/bellman_ford.o core/paths/dijkstra.o core/paths/distances.o core/paths/eulerian.o core/paths/histogram.o core/paths/johnson.o core/paths/random_walk.o core/paths/shortest_paths.o core/paths/simple_paths.o core/paths/unweighted.o core/properties/basic_properties.o core/properties/constraint.o core/properties/convergence_degree.o core/properties/dag.o core/properties/degrees.o core/properties/girth.o core/properties/loops.o core/properties/multiplicity.o core/properties/neighborhood.o core/properties/spectral.o core/properties/trees.o core/properties/triangles.o core/random/random.o core/scg/scg.o core/scg/scg_approximate_methods.o core/scg/scg_exact_scg.o core/scg/scg_kmeans.o core/scg/scg_optimal_method.o core/scg/scg_utils.o core/version.o vendor/cs/cs_add.o vendor/cs/cs_amd.o vendor/cs/cs_chol.o vendor/cs/cs_cholsol.o vendor/cs/cs_compress.o vendor/cs/cs_counts.o vendor/cs/cs_cumsum.o vendor/cs/cs_dfs.o vendor/cs/cs_dmperm.o vendor/cs/cs_droptol.o vendor/cs/cs_dropzeros.o vendor/cs/cs_dupl.o vendor/cs/cs_entry.o vendor/cs/cs_ereach.o vendor/cs/cs_etree.o vendor/cs/cs_fkeep.o vendor/cs/cs_gaxpy.o vendor/cs/cs_happly.o vendor/cs/cs_house.o vendor/cs/cs_ipvec.o vendor/cs/cs_leaf.o vendor/cs/cs_load.o vendor/cs/cs_lsolve.o vendor/cs/cs_ltsolve.o vendor/cs/cs_lu.o vendor/cs/cs_lusol.o vendor/cs/cs_malloc.o vendor/cs/cs_maxtrans.o vendor/cs/cs_multiply.o vendor/cs/cs_norm.o vendor/cs/cs_permute.o vendor/cs/cs_pinv.o vendor/cs/cs_post.o vendor/cs/cs_print.o vendor/cs/cs_pvec.o vendor/cs/cs_qr.o vendor/cs/cs_qrsol.o vendor/cs/cs_randperm.o vendor/cs/cs_reach.o vendor/cs/cs_scatter.o vendor/cs/cs_scc.o vendor/cs/cs_schol.o vendor/cs/cs_spsolve.o vendor/cs/cs_sqr.o vendor/cs/cs_symperm.o vendor/cs/cs_tdfs.o vendor/cs/cs_transpose.o vendor/cs/cs_updown.o vendor/cs/cs_usolve.o vendor/cs/cs_util.o vendor/cs/cs_utsolve.o vendor/mini-gmp/mini-gmp.o vendor/plfit/gss.o vendor/plfit/hzeta.o vendor/plfit/kolmogorov.o vendor/plfit/lbfgs.o vendor/plfit/mt.o vendor/plfit/options.o vendor/plfit/platform.o vendor/plfit/plfit.o vendor/plfit/plfit_error.o vendor/plfit/rbinom.o vendor/plfit/sampling.o vendor/arpack/dgetv0.o vendor/arpack/dlaqrb.o vendor/arpack/dmout.o vendor/arpack/dnaitr.o vendor/arpack/dnapps.o vendor/arpack/dnaup2.o vendor/arpack/dnaupd.o vendor/arpack/dnconv.o vendor/arpack/dneigh.o vendor/arpack/dneupd.o vendor/arpack/dngets.o vendor/arpack/dsaitr.o vendor/arpack/dsapps.o vendor/arpack/dsaup2.o vendor/arpack/dsaupd.o vendor/arpack/dsconv.o vendor/arpack/dseigt.o vendor/arpack/dsesrt.o vendor/arpack/dseupd.o vendor/arpack/dsgets.o vendor/arpack/dsortc.o vendor/arpack/dsortr.o vendor/arpack/dstatn.o vendor/arpack/dstats.o vendor/arpack/dstqrb.o vendor/arpack/dvout.o vendor/arpack/ivout.o vendor/arpack/second.o vendor/arpack/wrap.o vendor/simpleraytracer/Color.o vendor/simpleraytracer/Light.o vendor/simpleraytracer/Point.o vendor/simpleraytracer/RIgraphRay.o vendor/simpleraytracer/Ray.o vendor/simpleraytracer/RayTracer.o vendor/simpleraytracer/RayVector.o vendor/simpleraytracer/Shape.o vendor/simpleraytracer/Sphere.o vendor/simpleraytracer/Triangle.o vendor/simpleraytracer/unit_limiter.o vendor/uuid/R.o vendor/uuid/clear.o vendor/uuid/compare.o vendor/uuid/copy.o vendor/uuid/gen_uuid.o vendor/uuid/isnull.o vendor/uuid/pack.o vendor/uuid/parse.o vendor/uuid/unpack.o vendor/uuid/unparse.o leidenalg/CPMVertexPartition.o leidenalg/GraphHelper.o leidenalg/LinearResolutionParameterVertexPartition.o leidenalg/ModularityVertexPartition.o leidenalg/MutableVertexPartition.o leidenalg/Optimiser.o leidenalg/RBConfigurationVertexPartition.o leidenalg/RBERVertexPartition.o leidenalg/ResolutionParameterVertexPartition.o leidenalg/SignificanceVertexPartition.o leidenalg/SurpriseVertexPartition.o leidenbase/leidenFindPartition.o leidenbase/leidenFindPartitionR2C.o -lxml2 -lz -llzma -lm -lgmp -lglpk -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/leidenbase/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/leidenbase/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/leidenbase/src'
installing to /data/gannet/ripley/R/packages/tests-clang/leidenbase.Rcheck/00LOCK-leidenbase/00new/leidenbase/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (leidenbase)