* installing *source* package ‘ldt’ ...
** package ‘ldt’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.5’
using C++ compiler: ‘clang version 19.1.5’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ldt/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c array.cpp -o array.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c auc.cpp -o auc.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c correlation.cpp -o correlation.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c data_split.cpp -o data_split.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c dataset.cpp -o dataset.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c decompositions.cpp -o decompositions.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c derivative.cpp -o derivative.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c descriptive.cpp -o descriptive.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c discrete_choice.cpp -o discrete_choice.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c discrete_choice_extended.cpp -o discrete_choice_extended.o
descriptive.cpp:104:10: warning: variable 'sum' set but not used [-Wunused-but-set-variable]
104 | double sum = 0.0;
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c discrete_choice_modelset.cpp -o discrete_choice_modelset.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c discrete_choice_sim.cpp -o discrete_choice_sim.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c distance.cpp -o distance.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c distribution_gld.cpp -o distribution_gld.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c distributions_uni.cpp -o distributions_uni.o
In file included from distance.cpp:7:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on non-final 'ldt::Distance<true, DistanceMethod::kEuclidean, CorrelationMethod::kPearson>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::Distance<true, DistanceMethod::kEuclidean, CorrelationMethod::kPearson>>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<true, DistanceMethod::kEuclidean, CorrelationMethod::kPearson>>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
distance.cpp:19:14: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<true, DistanceMethod::kEuclidean, CorrelationMethod::kPearson>>::~unique_ptr' requested here
19 | return std::make_unique<Distance<true, DistanceMethod::kEuclidean,
| ^
In file included from distance.cpp:7:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on non-final 'ldt::Distance<true, DistanceMethod::kManhattan, CorrelationMethod::kPearson>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::Distance<true, DistanceMethod::kManhattan, CorrelationMethod::kPearson>>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<true, DistanceMethod::kManhattan, CorrelationMethod::kPearson>>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
distance.cpp:24:14: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<true, DistanceMethod::kManhattan, CorrelationMethod::kPearson>>::~unique_ptr' requested here
24 | return std::make_unique<Distance<true, DistanceMethod::kManhattan,
| ^
In file included from distance.cpp:7:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on non-final 'ldt::Distance<true, DistanceMethod::kMaximum, CorrelationMethod::kPearson>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::Distance<true, DistanceMethod::kMaximum, CorrelationMethod::kPearson>>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<true, DistanceMethod::kMaximum, CorrelationMethod::kPearson>>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
distance.cpp:29:14: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<true, DistanceMethod::kMaximum, CorrelationMethod::kPearson>>::~unique_ptr' requested here
29 | return std::make_unique<Distance<true, DistanceMethod::kMaximum,
| ^
In file included from distance.cpp:7:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on non-final 'ldt::Distance<true, DistanceMethod::kCorrelation, CorrelationMethod::kPearson>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::Distance<true, DistanceMethod::kCorrelation, CorrelationMethod::kPearson>>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<true, DistanceMethod::kCorrelation, CorrelationMethod::kPearson>>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
distance.cpp:36:16: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<true, DistanceMethod::kCorrelation, CorrelationMethod::kPearson>>::~unique_ptr' requested here
36 | return std::make_unique<Distance<true, DistanceMethod::kCorrelation,
| ^
In file included from distance.cpp:7:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on non-final 'ldt::Distance<true, DistanceMethod::kCorrelation, CorrelationMethod::kSpearman>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::Distance<true, DistanceMethod::kCorrelation, CorrelationMethod::kSpearman>>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<true, DistanceMethod::kCorrelation, CorrelationMethod::kSpearman>>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
distance.cpp:41:16: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<true, DistanceMethod::kCorrelation, CorrelationMethod::kSpearman>>::~unique_ptr' requested here
41 | return std::make_unique<Distance<true, DistanceMethod::kCorrelation,
| ^
In file included from distance.cpp:7:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on non-final 'ldt::Distance<true, DistanceMethod::kAbsCorrelation, CorrelationMethod::kPearson>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::Distance<true, DistanceMethod::kAbsCorrelation, CorrelationMethod::kPearson>>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<true, DistanceMethod::kAbsCorrelation, CorrelationMethod::kPearson>>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
distance.cpp:53:16: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<true, DistanceMethod::kAbsCorrelation, CorrelationMethod::kPearson>>::~unique_ptr' requested here
53 | return std::make_unique<Distance<true, DistanceMethod::kAbsCorrelation,
| ^
In file included from distance.cpp:7:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on non-final 'ldt::Distance<true, DistanceMethod::kAbsCorrelation, CorrelationMethod::kSpearman>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::Distance<true, DistanceMethod::kAbsCorrelation, CorrelationMethod::kSpearman>>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<true, DistanceMethod::kAbsCorrelation, CorrelationMethod::kSpearman>>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
distance.cpp:58:16: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<true, DistanceMethod::kAbsCorrelation, CorrelationMethod::kSpearman>>::~unique_ptr' requested here
58 | return std::make_unique<Distance<true, DistanceMethod::kAbsCorrelation,
| ^
In file included from distance.cpp:7:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on non-final 'ldt::Distance<false, DistanceMethod::kEuclidean, CorrelationMethod::kPearson>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::Distance<false, DistanceMethod::kEuclidean, CorrelationMethod::kPearson>>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<false, DistanceMethod::kEuclidean, CorrelationMethod::kPearson>>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
distance.cpp:74:14: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<false, DistanceMethod::kEuclidean, CorrelationMethod::kPearson>>::~unique_ptr' requested here
74 | return std::make_unique<Distance<false, DistanceMethod::kEuclidean,
| ^
In file included from distance.cpp:7:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on non-final 'ldt::Distance<false, DistanceMethod::kManhattan, CorrelationMethod::kPearson>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::Distance<false, DistanceMethod::kManhattan, CorrelationMethod::kPearson>>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<false, DistanceMethod::kManhattan, CorrelationMethod::kPearson>>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
distance.cpp:79:14: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<false, DistanceMethod::kManhattan, CorrelationMethod::kPearson>>::~unique_ptr' requested here
79 | return std::make_unique<Distance<false, DistanceMethod::kManhattan,
| ^
In file included from distance.cpp:7:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on non-final 'ldt::Distance<false, DistanceMethod::kMaximum, CorrelationMethod::kPearson>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::Distance<false, DistanceMethod::kMaximum, CorrelationMethod::kPearson>>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<false, DistanceMethod::kMaximum, CorrelationMethod::kPearson>>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
distance.cpp:84:14: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<false, DistanceMethod::kMaximum, CorrelationMethod::kPearson>>::~unique_ptr' requested here
84 | return std::make_unique<Distance<false, DistanceMethod::kMaximum,
| ^
In file included from distance.cpp:7:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on non-final 'ldt::Distance<false, DistanceMethod::kCorrelation, CorrelationMethod::kPearson>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::Distance<false, DistanceMethod::kCorrelation, CorrelationMethod::kPearson>>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<false, DistanceMethod::kCorrelation, CorrelationMethod::kPearson>>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
distance.cpp:91:16: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<false, DistanceMethod::kCorrelation, CorrelationMethod::kPearson>>::~unique_ptr' requested here
91 | return std::make_unique<Distance<false, DistanceMethod::kCorrelation,
| ^
In file included from distance.cpp:7:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on non-final 'ldt::Distance<false, DistanceMethod::kCorrelation, CorrelationMethod::kSpearman>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::Distance<false, DistanceMethod::kCorrelation, CorrelationMethod::kSpearman>>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<false, DistanceMethod::kCorrelation, CorrelationMethod::kSpearman>>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
distance.cpp:96:16: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<false, DistanceMethod::kCorrelation, CorrelationMethod::kSpearman>>::~unique_ptr' requested here
96 | return std::make_unique<Distance<false, DistanceMethod::kCorrelation,
| ^
In file included from distance.cpp:7:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on non-final 'ldt::Distance<false, DistanceMethod::kAbsCorrelation, CorrelationMethod::kPearson>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::Distance<false, DistanceMethod::kAbsCorrelation, CorrelationMethod::kPearson>>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<false, DistanceMethod::kAbsCorrelation, CorrelationMethod::kPearson>>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
distance.cpp:108:16: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<false, DistanceMethod::kAbsCorrelation, CorrelationMethod::kPearson>>::~unique_ptr' requested here
108 | return std::make_unique<Distance<false, DistanceMethod::kAbsCorrelation,
| ^
In file included from distance.cpp:7:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on non-final 'ldt::Distance<false, DistanceMethod::kAbsCorrelation, CorrelationMethod::kSpearman>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::Distance<false, DistanceMethod::kAbsCorrelation, CorrelationMethod::kSpearman>>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<false, DistanceMethod::kAbsCorrelation, CorrelationMethod::kSpearman>>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
distance.cpp:113:16: note: in instantiation of member function 'std::unique_ptr<ldt::Distance<false, DistanceMethod::kAbsCorrelation, CorrelationMethod::kSpearman>>::~unique_ptr' requested here
113 | return std::make_unique<Distance<false, DistanceMethod::kAbsCorrelation,
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c frequency_cost.cpp -o frequency_cost.o
14 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c group_data.cpp -o group_data.o
In file included from distributions_uni.cpp:7:
In file included from ./distributions.h:5:
In file included from ./helpers.h:8:
In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/beta.hpp:1721:
/data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable]
29 | const T x_extrema = 1 / (1 + a);
| ^~~~~~~~~
/data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<long double>::temme_root_finder' requested here
304 | temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2);
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<long double, boost::math::policies::policy<detail::forwarding_arg1, detail::forwarding_arg2, default_policy, default_policy, default_policy, default_policy, default_policy, default_policy, default_policy, default_policy, default_policy>>' requested here
615 | x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol);
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<long double, boost::math::policies::policy<detail::forwarding_arg1, detail::forwarding_arg2, default_policy, default_policy, default_policy, default_policy, default_policy, default_policy, default_policy, default_policy, default_policy>>' requested here
992 | rx = detail::ibeta_inv_imp(
| ^
/data/gannet/ripley/R/test-clang/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1015:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<default_policy, default_policy, default_policy, default_policy, default_policy, default_policy, default_policy, default_policy, default_policy, default_policy, default_policy>>' requested here
1015 | return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), policies::policy<>());
| ^
./helpers.h:98:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double>' requested here
98 | return boost::math::ibeta_inv(x, y, z);
| ^
distributions_uni.cpp:1135:12: note: in instantiation of function template specialization 'Math_iBetaInv<double>' requested here
1135 | return Math_iBetaInv(mParam1, mParam2, p);
| ^
In file included from group_data.cpp:7:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on 'ldt::GroupDataBase' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::GroupDataBase>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::GroupDataBase>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
group_data.cpp:91:14: note: in instantiation of member function 'std::unique_ptr<ldt::GroupDataBase>::~unique_ptr' requested here
91 | return std::unique_ptr<GroupDataBase>(
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c hcluster.cpp -o hcluster.o
1 warning generated.
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c helpers.cpp -o helpers.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c lbfgsb.c -o lbfgsb.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c linesearch.c -o linesearch.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c linpack.c -o linpack.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c lmbfgsb.cpp -o lmbfgsb.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c matrix.cpp -o matrix.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c matrix_la.cpp -o matrix_la.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c matrix_sym.cpp -o matrix_sym.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c miniCBLAS.c -o miniCBLAS.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c mixture.cpp -o mixture.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c modelset.cpp -o modelset.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c mpolynomial.cpp -o mpolynomial.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c nelder_mead.cpp -o nelder_mead.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c newton.cpp -o newton.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c pca.cpp -o pca.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c polynomial.cpp -o polynomial.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c print.c -o print.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c r_clustering.cpp -o r_clustering.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c r_dc.cpp -o r_dc.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c r_func.cpp -o r_func.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c r_ldt.cpp -o r_ldt.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c r_statistics.cpp -o r_statistics.o
In file included from r_clustering.cpp:2:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on 'ldt::DistanceBase' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::DistanceBase>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::DistanceBase>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
r_clustering.cpp:24:16: note: in instantiation of member function 'std::unique_ptr<ldt::DistanceBase>::~unique_ptr' requested here
24 | auto dista = DistanceBase::GetFromType(checkNan, distance0, correlation0,
| ^
In file included from r_clustering.cpp:2:
In file included from ./clustering.h:3:
In file included from ./correlation.h:3:
In file included from ./ldt_base.h:17:
In file included from /usr/local/clang19/bin/../include/c++/v1/complex:270:
In file included from /usr/local/clang19/bin/../include/c++/v1/sstream:317:
In file included from /usr/local/clang19/bin/../include/c++/v1/__ostream/basic_ostream.h:14:
In file included from /usr/local/clang19/bin/../include/c++/v1/__memory/shared_ptr.h:32:
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:80:5: warning: delete called on 'ldt::GroupDataBase' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor]
80 | delete __ptr;
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:292:7: note: in instantiation of member function 'std::default_delete<ldt::GroupDataBase>::operator()' requested here
292 | __ptr_.second()(__tmp);
| ^
/usr/local/clang19/bin/../include/c++/v1/__memory/unique_ptr.h:261:71: note: in instantiation of member function 'std::unique_ptr<ldt::GroupDataBase>::reset' requested here
261 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
| ^
r_clustering.cpp:89:16: note: in instantiation of member function 'std::unique_ptr<ldt::GroupDataBase>::~unique_ptr' requested here
89 | auto group = GroupDataBase::GetFromType(linkage0, distance0, correlation0,
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c r_sur.cpp -o r_sur.o
r_func.cpp:141:16: warning: variable 'co' set but not used [-Wunused-but-set-variable]
141 | unsigned int co = 0;
| ^
2 warnings generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c r_varma.cpp -o r_varma.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c roc.cpp -o roc.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c scoring.cpp -o scoring.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c searcher.cpp -o searcher.o
r_sur.cpp:208:9: warning: variable 'fcount' set but not used [-Wunused-but-set-variable]
208 | int fcount = 0;
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c searcher_reg.cpp -o searcher_reg.o
r_varma.cpp:270:9: warning: variable 'fcount' set but not used [-Wunused-but-set-variable]
270 | int fcount = 0;
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c statistics.cpp -o statistics.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c subalgorithms.c -o subalgorithms.o
subalgorithms.c:15:11: warning: variable 'nbdd' set but not used [-Wunused-but-set-variable]
15 | Ti i__, nbdd;
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c summary.cpp -o summary.o
1 warning generated.
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c sur.cpp -o sur.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c sur_extended.cpp -o sur_extended.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c sur_modelset.cpp -o sur_modelset.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c sur_projection.cpp -o sur_projection.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c sur_simulation.cpp -o sur_simulation.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c timer.c -o timer.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c varma.cpp -o varma.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c varma_arma.cpp -o varma_arma.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c varma_extended.cpp -o varma_extended.o
varma_arma.cpp:116:12: warning: expression result unused [-Wunused-value]
116 | for (i; i <= mMaInfCount; i++)
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c varma_forecast.cpp -o varma_forecast.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c varma_modelset.cpp -o varma_modelset.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c varma_restriction.cpp -o varma_restriction.o
varma_modelset.cpp:185:16: warning: variable 'j' set but not used [-Wunused-but-set-variable]
185 | Ti j = -1;
| ^
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c varma_simulation.cpp -o varma_simulation.o
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c varma_sizes.cpp -o varma_sizes.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/BH/include' -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c vmatrix.cpp -o vmatrix.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o ldt.so RcppExports.o array.o auc.o correlation.o data_split.o dataset.o decompositions.o derivative.o descriptive.o discrete_choice.o discrete_choice_extended.o discrete_choice_modelset.o discrete_choice_sim.o distance.o distribution_gld.o distributions_uni.o frequency_cost.o group_data.o hcluster.o helpers.o lbfgsb.o linesearch.o linpack.o lmbfgsb.o matrix.o matrix_la.o matrix_sym.o miniCBLAS.o mixture.o modelset.o mpolynomial.o nelder_mead.o newton.o pca.o polynomial.o print.o r_clustering.o r_dc.o r_func.o r_ldt.o r_statistics.o r_sur.o r_varma.o roc.o scoring.o searcher.o searcher_reg.o statistics.o subalgorithms.o summary.o sur.o sur_extended.o sur_modelset.o sur_projection.o sur_simulation.o timer.o varma.o varma_arma.o varma_extended.o varma_forecast.o varma_modelset.o varma_restriction.o varma_simulation.o varma_sizes.o vmatrix.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ldt/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ldt/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ldt/src'
installing to /data/gannet/ripley/R/packages/tests-clang/ldt.Rcheck/00LOCK-ldt/00new/ldt/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ldt)