* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/idem.Rcheck’
* using R Under development (unstable) (2025-02-17 r87732)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 20.1.0-rc2
    flang version 20.1.0-rc2
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘idem/DESCRIPTION’ ... OK
* this is package ‘idem’ version ‘5.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘idem’ can be installed ... [201s/298s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/idem-00install.html' for details.
* used C compiler: ‘clang version 20.1.0-rc2’
* used C++ compiler: ‘clang version 20.1.0-rc2’
* checking C++ specification ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [10s/11s] OK
* checking whether the package can be loaded with stated dependencies ... [10s/15s] OK
* checking whether the package can be unloaded cleanly ... [10s/13s] OK
* checking whether the namespace can be loaded with stated dependencies ... [8s/12s] OK
* checking whether the namespace can be unloaded cleanly ... [9s/13s] OK
* checking loading without being on the library search path ... [15s/25s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [54s/81s] OK
* checking Rd files ... NOTE
checkRd: (-1) imInfer.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) imInfer.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMDATA.Rd:22-23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMDATA.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMDATA.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:30-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:51-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:55-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:60-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:65-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:69-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.IDEMIMP.Rd:75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) summary.IDEMDATA.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) summary.IDEMDATA.Rd:17-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) summary.IDEMDATA.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) summary.IDEMINFER.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) summary.IDEMINFER.Rd:15: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... INFO
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [18s/24s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [50s/77s] OK
* checking PDF version of manual ... [8s/12s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE