* installing *source* package ‘glpkAPI’ ... ** package ‘glpkAPI’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... /usr/local/clang19/bin/clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/local/clang19/bin/clang accepts -g... yes checking for /usr/local/clang19/bin/clang option to accept ISO C89... none needed checking how to run the C preprocessor... /usr/local/clang19/bin/clang -E checking for prefix by checking for glpsol... no configure: No prefix given, trying /usr and /usr/local checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking glpk.h usability... yes checking glpk.h presence... yes checking for glpk.h... yes checking for library containing glp_create_prob... none required checking for glp_print_ranges... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.h ** libs using C compiler: ‘clang version 19.1.5’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/glpkAPI/src' /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DHAVE_CONFIG_H -I/usr/include -I/usr/local/include -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c glpkAPI.c -o glpkAPI.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DHAVE_CONFIG_H -I/usr/include -I/usr/local/include -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c glpkCallback.c -o glpkCallback.o /usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DHAVE_CONFIG_H -I/usr/include -I/usr/local/include -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o /usr/local/clang19/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o glpkAPI.so glpkAPI.o glpkCallback.o init.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -lglpk -lgmp /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/glpkAPI/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/glpkAPI/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/glpkAPI/src' installing to /data/gannet/ripley/R/packages/tests-clang/glpkAPI.Rcheck/00LOCK-glpkAPI/00new/glpkAPI/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glpkAPI)