* installing *source* package ‘glmtlp’ ...
** package ‘glmtlp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/glmtlp/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c algo.cc -o algo.o
In file included from algo.cc:26:
./utils.h:22:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
22 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c glmtlp_r_init.cc -o glmtlp_r_init.o
glmtlp_r_init.cc:20:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
20 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c init.cc -o init.o
In file included from init.cc:22:
./utils.h:22:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
22 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c linreg_l0.cc -o linreg_l0.o
In file included from linreg_l0.cc:24:
./utils.h:22:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
22 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c linreg_l1.cc -o linreg_l1.o
In file included from linreg_l1.cc:24:
./utils.h:22:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
22 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c linreg_tlp.cc -o linreg_tlp.o
In file included from linreg_tlp.cc:24:
./utils.h:22:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
22 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c logistic_l0.cc -o logistic_l0.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c logistic_l1.cc -o logistic_l1.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c logistic_tlp.cc -o logistic_tlp.o
In file included from logistic_l0.cc:24:
./utils.h:22:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
22 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
In file included from logistic_l1.cc:35:
./utils.h:22:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
22 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
1 warning generated.
In file included from logistic_tlp.cc:24:
./utils.h:22:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
22 | #define R_NO_REMAP
| ^
<command line>:2:9: note: previous definition is here
2 | #define R_NO_REMAP 1
| ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o glmtlp.so algo.o glmtlp_r_init.o init.o linreg_l0.o linreg_l1.o linreg_tlp.o logistic_l0.o logistic_l1.o logistic_tlp.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/glmtlp/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/glmtlp/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/glmtlp/src'
installing to /data/gannet/ripley/R/packages/tests-clang/glmtlp.Rcheck/00LOCK-glmtlp/00new/glmtlp/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glmtlp)