* installing *source* package ‘ggraph’ ...
** this is package ‘ggraph’ version ‘2.2.1’
** package ‘ggraph’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 20.1.0-rc2’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ggraph/src'
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c cactusTree.cpp -o cactusTree.o
In file included from cactusTree.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
      |                    ~~~~~~~~~~~^~~
      |                    operator""_xl
In file included from cactusTree.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
      |                  ~~~~~~~~~~~^~~
      |                  operator""_nm
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c circlePack.cpp -o circlePack.o
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c cpp11.cpp -o cpp11.o
In file included from circlePack.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/doubles.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
      |                    ~~~~~~~~~~~^~~
      |                    operator""_xl
In file included from circlePack.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/doubles.hpp:11:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
      |                  ~~~~~~~~~~~^~~
      |                  operator""_nm
In file included from cpp11.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/declarations.hpp:13:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:3:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
      |                    ~~~~~~~~~~~^~~
      |                    operator""_xl
In file included from cpp11.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/declarations.hpp:13:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:7:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
      |                  ~~~~~~~~~~~^~~
      |                  operator""_nm
2 warnings generated.
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c dendrogram.cpp -o dendrogram.o
In file included from dendrogram.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/logicals.hpp:7:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
      |                    ~~~~~~~~~~~^~~
      |                    operator""_xl
In file included from dendrogram.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/logicals.hpp:10:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_bool.hpp:11:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
      |                  ~~~~~~~~~~~^~~
      |                  operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c forceBundle.cpp -o forceBundle.o
In file included from forceBundle.cpp:6:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/doubles.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
      |                    ~~~~~~~~~~~^~~
      |                    operator""_xl
In file included from forceBundle.cpp:6:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/doubles.hpp:11:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
      |                  ~~~~~~~~~~~^~~
      |                  operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c hTree.cpp -o hTree.o
In file included from hTree.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
      |                    ~~~~~~~~~~~^~~
      |                    operator""_xl
In file included from hTree.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
      |                  ~~~~~~~~~~~^~~
      |                  operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c iciclePlot.cpp -o iciclePlot.o
In file included from iciclePlot.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
      |                    ~~~~~~~~~~~^~~
      |                    operator""_xl
In file included from iciclePlot.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
      |                  ~~~~~~~~~~~^~~
      |                  operator""_nm
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c lineCutter.cpp -o lineCutter.o
2 warnings generated.
In file included from lineCutter.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/doubles.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
      |                    ~~~~~~~~~~~^~~
      |                    operator""_xl
In file included from lineCutter.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/doubles.hpp:11:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
      |                  ~~~~~~~~~~~^~~
      |                  operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c nodes.cpp -o nodes.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c pathAttr.cpp -o pathAttr.o
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c treemap.cpp -o treemap.o
In file included from nodes.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
      |                    ~~~~~~~~~~~^~~
      |                    operator""_xl
In file included from nodes.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
      |                  ~~~~~~~~~~~^~~
      |                  operator""_nm
In file included from pathAttr.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:10:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
      |                    ~~~~~~~~~~~^~~
      |                    operator""_xl
In file included from pathAttr.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/list.hpp:9:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
      |                  ~~~~~~~~~~~^~~
      |                  operator""_nm
In file included from treemap.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
      |                    ~~~~~~~~~~~^~~
      |                    operator""_xl
In file included from treemap.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
      |                  ~~~~~~~~~~~^~~
      |                  operator""_nm
2 warnings generated.
2 warnings generated.
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang20/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c unrooted.cpp -o unrooted.o
In file included from unrooted.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:52:31: warning: identifier '_xl' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   52 | constexpr R_xlen_t operator"" _xl(unsigned long long int value) { return value; }
      |                    ~~~~~~~~~~~^~~
      |                    operator""_xl
In file included from unrooted.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:12:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/r_vector.hpp:19:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/named_arg.hpp:42:29: warning: identifier '_nm' preceded by whitespace in a literal operator declaration is deprecated [-Wdeprecated-literal-operator]
   42 | inline named_arg operator"" _nm(const char* name, std::size_t) { return named_arg(name); }
      |                  ~~~~~~~~~~~^~~
      |                  operator""_nm
2 warnings generated.
/usr/local/clang20/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o ggraph.so cactusTree.o circlePack.o cpp11.o dendrogram.o forceBundle.o hTree.o iciclePlot.o lineCutter.o nodes.o pathAttr.o treemap.o unrooted.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ggraph/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ggraph/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ggraph/src'
installing to /data/gannet/ripley/R/packages/tests-clang/ggraph.Rcheck/00LOCK-ggraph/00new/ggraph/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggraph)