Install log for 'ggraph'

* installing *source* package ‘ggraph’ ...
** package ‘ggraph’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 19.1.3’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ggraph/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c cactusTree.cpp -o cactusTree.o
In file included from cactusTree.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:11:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   11 | #define R_NO_REMAP
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c circlePack.cpp -o circlePack.o
In file included from circlePack.cpp:3:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/doubles.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:11:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   11 | #define R_NO_REMAP
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c cpp11.cpp -o cpp11.o
In file included from cpp11.cpp:5:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/declarations.hpp:13:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11.hpp:3:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:11:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   11 | #define R_NO_REMAP
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c dendrogram.cpp -o dendrogram.o
In file included from dendrogram.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/logicals.hpp:7:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:11:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   11 | #define R_NO_REMAP
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c forceBundle.cpp -o forceBundle.o
In file included from forceBundle.cpp:6:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/doubles.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:11:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   11 | #define R_NO_REMAP
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c hTree.cpp -o hTree.o
In file included from hTree.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:11:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   11 | #define R_NO_REMAP
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c iciclePlot.cpp -o iciclePlot.o
In file included from iciclePlot.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:11:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   11 | #define R_NO_REMAP
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c lineCutter.cpp -o lineCutter.o
In file included from lineCutter.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/doubles.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:11:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   11 | #define R_NO_REMAP
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c nodes.cpp -o nodes.o
In file included from nodes.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:11:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   11 | #define R_NO_REMAP
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c pathAttr.cpp -o pathAttr.o
In file included from pathAttr.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/data_frame.hpp:10:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:11:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   11 | #define R_NO_REMAP
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c treemap.cpp -o treemap.o
In file included from treemap.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:11:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   11 | #define R_NO_REMAP
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3  -DR_NO_REMAP -c unrooted.cpp -o unrooted.o
In file included from unrooted.cpp:1:
In file included from ./nodes.h:2:
In file included from /data/gannet/ripley/R/test-clang/cpp11/include/cpp11/integers.hpp:8:
/data/gannet/ripley/R/test-clang/cpp11/include/cpp11/R.hpp:11:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   11 | #define R_NO_REMAP
      |         ^
<command line>:2:9: note: previous definition is here
    2 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o ggraph.so cactusTree.o circlePack.o cpp11.o dendrogram.o forceBundle.o hTree.o iciclePlot.o lineCutter.o nodes.o pathAttr.o treemap.o unrooted.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ggraph/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/ggraph/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/ggraph/src'
installing to /data/gannet/ripley/R/packages/tests-clang/ggraph.Rcheck/00LOCK-ggraph/00new/ggraph/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggraph)