* installing *source* package ‘frailtypack’ ...
** package ‘frailtypack’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.8’
using Fortran compiler: ‘flang-new version 18.1.8’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/frailtypack/src'
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c Adonnees.f90 -o Adonnees.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c AparamMultive.f90 -o AparamMultive.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c Aparameters.f90 -o Aparameters.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c aGhermite.f90 -o aGhermite.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c aaOptim.f90 -o aaOptim.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c aaOptim_SCL_0.f90 -o aaOptim_SCL_0.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c aaOptimres.f90 -o aaOptimres.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c ahrmsym.f90 -o ahrmsym.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c fortran_random.c -o fortran_random.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajsplinesIndiv.f90 -o funcpajsplinesIndiv.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajsplines_fam.f90 -o funcpajsplines_fam.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajsplines_intcens.f90 -o funcpajsplines_intcens.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajsplines_log.f90 -o funcpajsplines_log.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajsplines_logIndiv.f90 -o funcpajsplines_logIndiv.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajweib.f90 -o funcpajweib.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajweib_fam.f90 -o funcpajweib_fam.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajweib_intcens.f90 -o funcpajweib_intcens.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajweib_log.f90 -o funcpajweib_log.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpalongi_uni.f90 -o funcpalongi_uni.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpancpm.f90 -o funcpancpm.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpansplines.f90 -o funcpansplines.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpanweib.f90 -o funcpanweib.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpas_tps.f90 -o funcpas_tps.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpascpm.f90 -o funcpascpm.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpascpm_intcens.f90 -o funcpascpm_intcens.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpascpm_log.f90 -o funcpascpm_log.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpasgenadditif_alternatif.f90 -o funcpasgenadditif_alternatif.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpasgenadditif_pen.f90 -o funcpasgenadditif_pen.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpasgenadditif_tps.f90 -o funcpasgenadditif_tps.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpasgenadditifalternatif_tps.f90 -o funcpasgenadditifalternatif_tps.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpasgenloglogistic.f90 -o funcpasgenloglogistic.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpasgenweib.f90 -o funcpasgenweib.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpassplines.f90 -o funcpassplines.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpassplines_intcens.f90 -o funcpassplines_intcens.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpassplines_log.f90 -o funcpassplines_log.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpasweib.f90 -o funcpasweib.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpasweib_intcens.f90 -o funcpasweib_intcens.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpasweib_log.f90 -o funcpasweib_log.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c joint.f90 -o joint.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c natural_effects.f90 -o natural_effects.o
error: Semantic errors in natural_effects.f90
./natural_effects.f90:2:7: error: Cannot read module file for module 'autres_fonctions': Source file 'autres_fonctions.mod' was not found
use Autres_fonctions!,only:bgos,Cholesky_Factorisation,splinebasisIndiv,bb
^^^^^^^^^^^^^^^^
./natural_effects.f90:351:7: warning: Reference to the procedure 'cholesky_factorisation' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object shapes
call Cholesky_Factorisation(cdummy)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./natural_effects.f90:138:8: previous reference to 'cholesky_factorisation'
call Cholesky_Factorisation(sigma)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:223: natural_effects.o] Error 1
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c joint_competing.f90 -o joint_competing.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c joint_longi_nl.f90 -o joint_longi_nl.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c joint_surrogate.f90 -o joint_surrogate.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c jointgen.f90 -o jointgen.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c longi_uni_nl.f90 -o longi_uni_nl.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c multiveJoint.f90 -o multiveJoint.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c nested.f90 -o nested.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c prediction.f90 -o prediction.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c prediction_Recurr_Sha.f90 -o prediction_Recurr_Sha.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c prediction_biv.f90 -o prediction_biv.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c prediction_sha_logn.f90 -o prediction_sha_logn.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c prediction_tri.f90 -o prediction_tri.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c prediction_tri_nl.f90 -o prediction_tri_nl.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c predictionfam.f90 -o predictionfam.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c risque.f90 -o risque.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c somme.f90 -o somme.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c survival.f90 -o survival.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c test.f90 -o test.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c autres_fonctions.f90 -o autres_fonctions.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c aaOptim_New_scl2.f90 -o aaOptim_New_scl2.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c aaOptim_New_scl.f90 -o aaOptim_New_scl.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c Integrant_scl.f90 -o Integrant_scl.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c aaUseFunction.f90 -o aaUseFunction.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c aaUseFunctionG.f90 -o aaUseFunctionG.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c aamarq98o.f90 -o aamarq98o.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c additive.f90 -o additive.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c afuncpasres.f90 -o afuncpasres.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c aresidusMartingale.f90 -o aresidusMartingale.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c distance.f90 -o distance.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c epoce.f90 -o epoce.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c epoce_log.f90 -o epoce_log.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c epoce_long.f90 -o epoce_long.o
./epoce_long.f90:2832:25: warning: Reference to the procedure 'integrationdc2' has an implicit interface that is distinct from another reference: incompatible dummy argument #11: incompatible dummy data object shapes
call integrationdc2(survdcCM,t0dc(i),T,sudc,abserr,resabs,resasc,i,b1,npp,Xea22(1:2),2)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./epoce_long.f90:2364:45: previous reference to 'integrationdc2'
call integrationdc2(survRCM,t0(k),t1(k),resultR,&
^
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c epoce_long_nl.f90 -o epoce_long_nl.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c frailtypack.f90 -o frailtypack.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c frailtypackgen.f90 -o frailtypackgen.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaG_tps.f90 -o funcpaG_tps.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaGcpm.f90 -o funcpaGcpm.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaGcpm_intcens.f90 -o funcpaGcpm_intcens.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaGcpm_log.f90 -o funcpaGcpm_log.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaGsplines.f90 -o funcpaGsplines.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaGsplines_intcens.f90 -o funcpaGsplines_intcens.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaGsplines_log.f90 -o funcpaGsplines_log.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaGweib.f90 -o funcpaGweib.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaGweib_intcens.f90 -o funcpaGweib_intcens.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaGweib_log.f90 -o funcpaGweib_log.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaMultivCpm.f90 -o funcpaMultivCpm.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaMultivSplines.f90 -o funcpaMultivSplines.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaMultivWeib.f90 -o funcpaMultivWeib.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaacpm.f90 -o funcpaacpm.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaasplines.f90 -o funcpaasplines.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaaweib.f90 -o funcpaaweib.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpaj_tps.f90 -o funcpaj_tps.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajcompetingsplines.f90 -o funcpajcompetingsplines.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajcompetingweib.f90 -o funcpajcompetingweib.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajcpm.f90 -o funcpajcpm.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajcpm_log.f90 -o funcpajcpm_log.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajgen_tps.f90 -o funcpajgen_tps.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajgeneral.f90 -o funcpajgeneral.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajgenparam.f90 -o funcpajgenparam.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajlongisplines.f90 -o funcpajlongisplines.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajlongisplines2.f90 -o funcpajlongisplines2.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajlongisplines_nl.f90 -o funcpajlongisplines_nl.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajlongiweib.f90 -o funcpajlongiweib.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajlongiweib_nl.f90 -o funcpajlongiweib_nl.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajsplines.f90 -o funcpajsplines.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpasgenlognormal.f90 -o funcpasgenlognormal.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c joint_longi.f90 -o joint_longi.o
error: Semantic errors in joint_longi.f90
./joint_longi.f90:45:9: error: Cannot read module file for module 'natural_effects_longi': Source file 'natural_effects_longi.mod' was not found
use natural_effects_longi
^^^^^^^^^^^^^^^^^^^^^
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:223: joint_longi.o] Error 1
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c jointsurrokendall.f90 -o jointsurrokendall.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c surrosim.f90 -o surrosim.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpa_laplace.f90 -o funcpa_laplace.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpa_adaptative.f90 -o funcpa_adaptative.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c Integrale_mult_scl.f90 -o Integrale_mult_scl.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c Pour_Adaptative.f90 -o Pour_Adaptative.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajsplines_copule_surrogate_scl_2.f90 -o funcpajsplines_copule_surrogate_scl_2.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajsplines_surrogate_scl_1.f90 -o funcpajsplines_surrogate_scl_1.o
/usr/local/clang18/bin/flang-new -fopenmp -fpic -O2 -pedantic -c funcpajsplines_surrogate_scl_2.f90 -o funcpajsplines_surrogate_scl_2.o
make[1]: Target 'frailtypack.so' not remade because of errors.
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/frailtypack/src'
ERROR: compilation failed for package ‘frailtypack’
* removing ‘/data/gannet/ripley/R/packages/tests-clang/frailtypack.Rcheck/frailtypack’