- using R Under development (unstable) (2024-12-10 r87437)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
clang version 19.1.5
flang-new version 19.1.5
- running under: Fedora Linux 36 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘frailtyMMpen/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘frailtyMMpen’ version ‘1.2.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘frailtyMMpen’ can be installed ... [42s/41s] OK
See the install log for details.
- used C++ compiler: ‘clang version 19.1.5’
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking whether startup messages can be suppressed ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [23s/27s] OK
- checking Rd files ... NOTE
checkRd: (-1) frailtyMM.Rd:71: Lost braces
71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
98 | \if{latex}{\out{\begin{center}}{\figure{fig8.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:103: Lost braces
103 | \if{latex}{\out{\begin{center}}{\figure{fig9.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:108: Lost braces
108 | \if{latex}{\out{\begin{center}}{\figure{fig10.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:113: Lost braces
113 | \if{latex}{\out{\begin{center}}{\figure{fig11.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:118: Lost braces
118 | \if{latex}{\out{\begin{center}}{\figure{fig12.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:123: Lost braces
123 | \if{latex}{\out{\begin{center}}{\figure{fig13.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:128: Lost braces
128 | \if{latex}{\out{\begin{center}}{\figure{fig14.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:136: Lost braces; missing escapes or markup?
136 | is fitted, please use {1,2...,K} to denote the event id from the input data. To run the recurrent event model,
| ^
checkRd: (-1) frailtyMM.Rd:50: Lost braces; missing escapes or markup?
50 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
| ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
84 | \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
89 | \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
94 | \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... OK
- checking PDF version of manual ... [13s/20s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 NOTE