* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/flexCWM.Rcheck’
* using R Under development (unstable) (2025-02-17 r87732)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 20.1.0-rc2
    flang version 20.1.0-rc2
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘flexCWM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flexCWM’ version ‘1.92’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flexCWM’ can be installed ... [24s/31s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/flexCWM-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [37s/48s] OK
* checking Rd files ... NOTE
checkRd: (-1) cwm.Rd:93: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:98: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:100: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:101: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:102: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:103: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:106: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:107: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:108: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:110: Lost braces; missing escapes or markup?
   110 |   \item{\code{concomitant} {a list with estimated concomitant variables parameters for each mixture component}}
       |                            ^
checkRd: (-1) cwm.Rd:112: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:113: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:114: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:115: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:116: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:117: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cwm.Rd:118: Lost braces in \itemize; \value handles \item{}{} directly
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... INFO
Undeclared package ‘mixture’ in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [9s/12s] OK
* checking PDF version of manual ... [9s/11s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE