* installing *source* package ‘fio’ ... ** package ‘fio’ successfully unpacked and MD5 sums checked ** using staged installation Using cargo 1.69.0 Using rustc 1.69.0 (84c898d65 2023-04-16) (Fedora 1.69.0-1.fc36) ** libs using C compiler: ‘clang version 18.1.8’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/fio/src' rm -Rf fio.so ./rust/target/release/libfio.a entrypoint.o /data/gannet/ripley/R/packages/tests-clang/fio/src/.cargo /data/gannet/ripley/R/packages/tests-clang/fio/src/vendor /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c entrypoint.c -o entrypoint.o if [ -f ./rust/vendor.tar.xz ]; then \ tar xf rust/vendor.tar.xz && \ mkdir -p /data/gannet/ripley/R/packages/tests-clang/fio/src/.cargo && \ cp rust/vendor-config.toml /data/gannet/ripley/R/packages/tests-clang/fio/src/.cargo/config.toml; \ fi # In some environments, ~/.cargo/bin might not be included in PATH, so we need # to set it here to ensure cargo can be invoked. It is appended to PATH and # therefore is only used if cargo is absent from the user's PATH. if [ "" != "true" ]; then \ export CARGO_HOME=/data/gannet/ripley/R/packages/tests-clang/fio/src/.cargo; \ fi && \ export PATH="/usr/local/clang/bin:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin" && \ cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target && \ echo "Rust version:" `rustc --version` && \ echo "Cargo version:" `cargo --version`; Compiling proc-macro2 v1.0.86 Compiling libm v0.2.8 Compiling autocfg v1.3.0 Compiling unicode-ident v1.0.12 Compiling num-traits v0.2.19 Compiling quote v1.0.36 Compiling syn v2.0.71 Compiling rand_core v0.6.4 Compiling rand v0.8.5 Compiling bytemuck v1.16.1 Compiling num-complex v0.4.6 Compiling nano-gemm-codegen v0.1.0 Compiling crossbeam-utils v0.8.20 Compiling thiserror v1.0.62 Compiling crossbeam-epoch v0.9.18 Compiling paste v1.0.15 Compiling rayon-core v1.12.1 Compiling reborrow v0.5.5 Compiling crossbeam-deque v0.8.5 Compiling thiserror-impl v1.0.62 Compiling pulp v0.18.21 Compiling bitflags v1.3.2 Compiling either v1.13.0 Compiling once_cell v1.19.0 Compiling rayon v1.10.0 Compiling raw-cpuid v10.7.0 Compiling dyn-stack v0.10.0 Compiling ucd-trie v0.1.6 Compiling seq-macro v0.3.5 Compiling memchr v2.7.4 Compiling gemm-common v0.18.0 Compiling pest v2.7.11 Compiling nano-gemm-core v0.1.0 Compiling pest_meta v2.7.11 Compiling nano-gemm-c64 v0.1.0 Compiling nano-gemm-c32 v0.1.0 Compiling nano-gemm-f32 v0.1.0 Compiling nano-gemm-f64 v0.1.0 Compiling num-integer v0.1.46 Compiling pest_generator v2.7.11 Compiling libR-sys v0.7.0 (https://github.com/extendr/libR-sys?rev=976c56d396175f8d09548b0a1f0a77fc393018f2#976c56d3) Compiling pest_derive v2.7.11 Compiling num-bigint v0.4.6 Compiling equator-macro v0.2.1 Compiling serde v1.0.204 Compiling libc v0.2.155 Compiling equator v0.2.2 Compiling py_literal v0.4.0 Compiling gemm-f64 v0.18.0 Compiling gemm-c32 v0.18.0 Compiling gemm-f32 v0.18.0 Compiling gemm-c64 v0.18.0 Compiling serde_derive v1.0.204 Compiling coe-rs v0.1.2 Compiling matrixcompare-core v0.1.0 Compiling byteorder v1.5.0 Compiling extendr-api v0.7.0 Compiling npyz v0.8.3 Compiling matrixcompare v0.3.0 Compiling faer-entity v0.19.0 Compiling gemm v0.18.0 Compiling nano-gemm v0.1.2 Compiling extendr-macros v0.7.0 Compiling rand_distr v0.4.3 Compiling dbgf v0.1.2 Compiling faer v0.19.1 Compiling num_cpus v1.16.0 Compiling fio v0.1.1 (/data/gannet/ripley/R/packages/tests-clang/fio/src/rust) Finished release [optimized] target(s) in 17m 09s Rust version: rustc 1.69.0 (84c898d65 2023-04-16) (Fedora 1.69.0-1.fc36) Cargo version: cargo 1.69.0 rm -Rf /data/gannet/ripley/R/packages/tests-clang/fio/src/.cargo /data/gannet/ripley/R/packages/tests-clang/fio/src/vendor ./rust/target/release/build; \ /usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o fio.so entrypoint.o -L./rust/target/release -lfio make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/fio/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/fio/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/fio/src' installing to /data/gannet/ripley/R/packages/tests-clang/fio.Rcheck/00LOCK-fio/00new/fio/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fio)