* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck’
* using R Under development (unstable) (2025-02-28 r87848)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
clang version 20.1.0-rc3
flang version 20.1.0-rc3
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘ecostats/DESCRIPTION’ ... OK
* this is package ‘ecostats’ version ‘1.2.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ecostats’ can be installed ... [18s/23s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/ecostats-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [27s/34s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [22s/28s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [280s/353s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘Chapter10Solutions.Rmd’ using rmarkdown
--- finished re-building ‘Chapter10Solutions.Rmd’
--- re-building ‘Chapter11Solutions.Rmd’ using rmarkdown
--- finished re-building ‘Chapter11Solutions.Rmd’
--- re-building ‘Chapter12Solutions.Rmd’ using rmarkdown
--- finished re-building ‘Chapter12Solutions.Rmd’
--- re-building ‘Chapter13Solutions.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.3-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33249 bytes
Input file size = 33375 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25542
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25542
Output IDAT size = 25542 bytes (7707 bytes decrease)
Output file size = 25620 bytes (7755 bytes = 23.24% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.5-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35853 bytes
Input file size = 35979 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27814
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27814
Output IDAT size = 27814 bytes (8039 bytes decrease)
Output file size = 27892 bytes (8087 bytes = 22.48% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.6-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29834 bytes
Input file size = 29948 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23479
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23479
Output IDAT size = 23479 bytes (6355 bytes decrease)
Output file size = 23557 bytes (6391 bytes = 21.34% decrease)
--- finished re-building ‘Chapter13Solutions.Rmd’
--- re-building ‘Chapter14Solutions.Rmd’ using rmarkdown
--- finished re-building ‘Chapter14Solutions.Rmd’
--- re-building ‘Chapter15Solutions.Rmd’ using rmarkdown
--- finished re-building ‘Chapter15Solutions.Rmd’
--- re-building ‘Chapter16Solutions.Rmd’ using rmarkdown
--- finished re-building ‘Chapter16Solutions.Rmd’
--- re-building ‘Chapter17Solutions.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.1-1.png
672x336 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 56492 bytes
Input file size = 56642 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45148
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45148
Output IDAT size = 45148 bytes (11344 bytes decrease)
Output file size = 45226 bytes (11416 bytes = 20.15% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.2-1.png
672x336 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 49922 bytes
Input file size = 50072 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40415
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40415
Output IDAT size = 40415 bytes (9507 bytes decrease)
Output file size = 40493 bytes (9579 bytes = 19.13% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.2-1.png
672x336 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 56481 bytes
Input file size = 56631 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44598
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44598
Output IDAT size = 44598 bytes (11883 bytes decrease)
Output file size = 44676 bytes (11955 bytes = 21.11% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.2variation-1.png
672x336 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45847 bytes
Input file size = 45985 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36846
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36846
Output IDAT size = 36846 bytes (9001 bytes decrease)
Output file size = 36924 bytes (9061 bytes = 19.70% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.3cord-1.png
672x336 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 88650 bytes
Input file size = 88848 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 68019
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 68019
Output IDAT size = 68019 bytes (20631 bytes decrease)
Output file size = 68097 bytes (20751 bytes = 23.36% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.3X-1.png
672x336 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 84854 bytes
Input file size = 85052 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 65245
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 65245
Output IDAT size = 65245 bytes (19609 bytes decrease)
Output file size = 65323 bytes (19729 bytes = 23.20% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.3-1.png
672x336 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 64260 bytes
Input file size = 64422 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43452
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43452
Output IDAT size = 43452 bytes (20808 bytes decrease)
Output file size = 43530 bytes (20892 bytes = 32.43% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.4-1.png
672x336 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 39518 bytes
Input file size = 39644 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32734
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32734
Output IDAT size = 32734 bytes (6784 bytes decrease)
Output file size = 32812 bytes (6832 bytes = 17.23% decrease)
--- finished re-building ‘Chapter17Solutions.Rmd’
--- re-building ‘Chapter1Solutions.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/proptest graph-1.png
480x288 pixels, 8 bits/pixel, 244 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 2638 bytes
Input file size = 3460 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2169
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2152
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2152
Output IDAT size = 2152 bytes (486 bytes decrease)
Output file size = 2230 bytes (1230 bytes = 35.55% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/ravens plot-1.png
480x288 pixels, 8 bits/pixel, 234 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 2701 bytes
Input file size = 3493 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2172
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2172
Output IDAT size = 2172 bytes (529 bytes decrease)
Output file size = 2250 bytes (1243 bytes = 35.59% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/guineapigs plot-1.png
576x288 pixels, 8 bits/pixel, 242 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 2974 bytes
Input file size = 3790 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2525
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2525
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2525
Output IDAT size = 2525 bytes (449 bytes decrease)
Output file size = 2603 bytes (1187 bytes = 31.32% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/Code 1.2-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26316 bytes
Input file size = 26430 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21456
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21456
Output IDAT size = 21456 bytes (4860 bytes decrease)
Output file size = 21534 bytes (4896 bytes = 18.52% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/Code 1.3-1.png
384x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15867 bytes
Input file size = 15957 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12334
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12334
Output IDAT size = 12334 bytes (3533 bytes decrease)
Output file size = 12412 bytes (3545 bytes = 22.22% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/global plants-1.png
384x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6537 bytes
Input file size = 7395 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5928
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5898
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5898
Output IDAT size = 5898 bytes (639 bytes decrease)
Output file size = 5976 bytes (1419 bytes = 19.19% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/global plants logHt-1.png
384x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6495 bytes
Input file size = 7353 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5760
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5734
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5734
Output IDAT size = 5734 bytes (761 bytes decrease)
Output file size = 5812 bytes (1541 bytes = 20.96% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/seaweed plot-1.png
384x384 pixels, 8 bits/pixel, 242 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3503 bytes
Input file size = 4319 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2836
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2836
Output IDAT size = 2836 bytes (667 bytes decrease)
Output file size = 2914 bytes (1405 bytes = 32.53% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/seaweed transform-1.png
768x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11085 bytes
Input file size = 11955 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9869
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9810
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9810
Output IDAT size = 9810 bytes (1275 bytes decrease)
Output file size = 9888 bytes (2067 bytes = 17.29% decrease)
--- finished re-building ‘Chapter1Solutions.Rmd’
--- re-building ‘Chapter2Solutions.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapig qqplots-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14656 bytes
Input file size = 14746 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10900
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10900
Output IDAT size = 10900 bytes (3756 bytes decrease)
Output file size = 10978 bytes (3768 bytes = 25.55% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapig qqplots-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14730 bytes
Input file size = 14820 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10872
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10872
Output IDAT size = 10872 bytes (3858 bytes decrease)
Output file size = 10950 bytes (3870 bytes = 26.11% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality scatterplot-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5049 bytes
Input file size = 5904 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4487
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4464
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4464
Output IDAT size = 4464 bytes (585 bytes decrease)
Output file size = 4542 bytes (1362 bytes = 23.07% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality resplots-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17502 bytes
Input file size = 17604 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12625
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12625
Output IDAT size = 12625 bytes (4877 bytes decrease)
Output file size = 12703 bytes (4901 bytes = 27.84% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality resplots-2.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7163 bytes
Input file size = 8021 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6650
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6544
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6544
Output IDAT size = 6544 bytes (619 bytes decrease)
Output file size = 6622 bytes (1399 bytes = 17.44% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality simenvelope-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14301 bytes
Input file size = 14391 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10611
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10611
Output IDAT size = 10611 bytes (3690 bytes decrease)
Output file size = 10689 bytes (3702 bytes = 25.72% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality simenvelope-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13360 bytes
Input file size = 13450 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10036
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10036
Output IDAT size = 10036 bytes (3324 bytes decrease)
Output file size = 10114 bytes (3336 bytes = 24.80% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7361 bytes
Input file size = 8219 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6792
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6733
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6733
Output IDAT size = 6733 bytes (628 bytes decrease)
Output file size = 6811 bytes (1408 bytes = 17.13% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20564 bytes
Input file size = 20666 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14471
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14471
Output IDAT size = 14471 bytes (6093 bytes decrease)
Output file size = 14549 bytes (6117 bytes = 29.60% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-3.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14467 bytes
Input file size = 14557 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10675
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10675
Output IDAT size = 10675 bytes (3792 bytes decrease)
Output file size = 10753 bytes (3804 bytes = 26.13% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9401 bytes
Input file size = 10271 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8765
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8656
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8656
Output IDAT size = 8656 bytes (745 bytes decrease)
Output file size = 8734 bytes (1537 bytes = 14.96% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25483 bytes
Input file size = 25597 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17986
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17986
Output IDAT size = 17986 bytes (7497 bytes decrease)
Output file size = 18064 bytes (7533 bytes = 29.43% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-3.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15016 bytes
Input file size = 15106 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11201
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11201
Output IDAT size = 11201 bytes (3815 bytes decrease)
Output file size = 11279 bytes (3827 bytes = 25.33% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12707 bytes
Input file size = 12797 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9422
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9422
Output IDAT size = 9422 bytes (3285 bytes decrease)
Output file size = 9500 bytes (3297 bytes = 25.76% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14218 bytes
Input file size = 14308 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10568
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10568
Output IDAT size = 10568 bytes (3650 bytes decrease)
Output file size = 10646 bytes (3662 bytes = 25.59% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform slplot-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14326 bytes
Input file size = 14416 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10687
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10687
Output IDAT size = 10687 bytes (3639 bytes decrease)
Output file size = 10765 bytes (3651 bytes = 25.33% decrease)
--- finished re-building ‘Chapter2Solutions.Rmd’
--- re-building ‘Chapter3Solutions.Rmd’ using rmarkdown
--- finished re-building ‘Chapter3Solutions.Rmd’
--- re-building ‘Chapter4Solutions.Rmd’ using rmarkdown
--- finished re-building ‘Chapter4Solutions.Rmd’
--- re-building ‘Chapter5Solutions.Rmd’ using rmarkdown
--- finished re-building ‘Chapter5Solutions.Rmd’
--- re-building ‘Chapter6Solutions.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter6Solutions_files/figure-html/fig6.1-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16554 bytes
Input file size = 16656 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12889
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12889
Output IDAT size = 12889 bytes (3665 bytes decrease)
Output file size = 12967 bytes (3689 bytes = 22.15% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter6Solutions_files/figure-html/code62-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31444 bytes
Input file size = 31558 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24705
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24705
Output IDAT size = 24705 bytes (6739 bytes decrease)
Output file size = 24783 bytes (6775 bytes = 21.47% decrease)
Quitting from lines 80-81 [code64] (Chapter6Solutions.Rmd)
Error: processing vignette 'Chapter6Solutions.Rmd' failed with diagnostics:
Profiling over both the residual variance and
fixed effects is not numerically consistent with
profiling over the fixed effects only (relative difference: 1);
consider adjusting devmatchtol
--- failed re-building ‘Chapter6Solutions.Rmd’
--- re-building ‘Chapter7Solutions.Rmd’ using rmarkdown
--- finished re-building ‘Chapter7Solutions.Rmd’
--- re-building ‘Chapter8Solutions.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box82-1.png
384x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24559 bytes
Input file size = 24661 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17849
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17849
Output IDAT size = 17849 bytes (6710 bytes decrease)
Output file size = 17927 bytes (6734 bytes = 27.31% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box82-2.png
384x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20060 bytes
Input file size = 20162 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15133
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15133
Output IDAT size = 15133 bytes (4927 bytes decrease)
Output file size = 15211 bytes (4951 bytes = 24.56% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box84-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 58111 bytes
Input file size = 58273 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49399
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49399
Output IDAT size = 49399 bytes (8712 bytes decrease)
Output file size = 49477 bytes (8796 bytes = 15.09% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box85-1.png
384x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35038 bytes
Input file size = 35164 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24590
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24590
Output IDAT size = 24590 bytes (10448 bytes decrease)
Output file size = 24668 bytes (10496 bytes = 29.85% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box85-2.png
384x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28062 bytes
Input file size = 28176 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19445
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19445
Output IDAT size = 19445 bytes (8617 bytes decrease)
Output file size = 19523 bytes (8653 bytes = 30.71% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box86-1.png
672x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24383 bytes
Input file size = 24485 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20155
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20155
Output IDAT size = 20155 bytes (4228 bytes decrease)
Output file size = 20233 bytes (4252 bytes = 17.37% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box87-1.png
672x336 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 30890 bytes
Input file size = 31784 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29983
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 29385
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 28884
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 28504
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 28504
Output IDAT size = 28504 bytes (2386 bytes decrease)
Output file size = 28582 bytes (3202 bytes = 10.07% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box87 sim-1.png
672x336 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 35699 bytes
Input file size = 36605 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34879
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 34066
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 32656
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 32139
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 32139
Output IDAT size = 32139 bytes (3560 bytes decrease)
Output file size = 32217 bytes (4388 bytes = 11.99% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box88-1.png
672x336 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 32345 bytes
Input file size = 33239 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31356
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30806
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30806
Output IDAT size = 30806 bytes (1539 bytes decrease)
Output file size = 30884 bytes (2355 bytes = 7.09% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box89-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13625 bytes
Input file size = 13715 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10768
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10768
Output IDAT size = 10768 bytes (2857 bytes decrease)
Output file size = 10846 bytes (2869 bytes = 20.92% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box89-2.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13992 bytes
Input file size = 14082 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10849
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10849
Output IDAT size = 10849 bytes (3143 bytes decrease)
Output file size = 10927 bytes (3155 bytes = 22.40% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex86-1.png
672x336 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 32203 bytes
Input file size = 33097 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31273
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30739
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30739
Output IDAT size = 30739 bytes (1464 bytes decrease)
Output file size = 30817 bytes (2280 bytes = 6.89% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex87-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12364 bytes
Input file size = 12454 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9756
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9756
Output IDAT size = 9756 bytes (2608 bytes decrease)
Output file size = 9834 bytes (2620 bytes = 21.04% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex87-2.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13512 bytes
Input file size = 13602 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10603
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10603
Output IDAT size = 10603 bytes (2909 bytes decrease)
Output file size = 10681 bytes (2921 bytes = 21.47% decrease)
--- finished re-building ‘Chapter8Solutions.Rmd’
--- re-building ‘Chapter9Solutions.Rmd’ using rmarkdown
--- finished re-building ‘Chapter9Solutions.Rmd’
--- re-building ‘ecostats.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/unnamed-chunk-1-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 98748 bytes
Input file size = 98970 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 81011
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 81011
Output IDAT size = 81011 bytes (17737 bytes decrease)
Output file size = 81089 bytes (17881 bytes = 18.07% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/unnamed-chunk-2-1.png
384x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17029 bytes
Input file size = 17131 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13030
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13030
Output IDAT size = 13030 bytes (3999 bytes decrease)
Output file size = 13108 bytes (4023 bytes = 23.48% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/aphidData-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32824 bytes
Input file size = 32950 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25167
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25167
Output IDAT size = 25167 bytes (7657 bytes decrease)
Output file size = 25245 bytes (7705 bytes = 23.38% decrease)
--- finished re-building ‘ecostats.Rmd’
SUMMARY: processing the following file failed:
‘Chapter6Solutions.Rmd’
Error: Vignette re-building failed.
Execution halted
* checking PDF version of manual ... [8s/11s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR