• using R Under development (unstable) (2025-02-15 r87725)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 19.1.7     flang-new version 19.1.7
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘ecostats/DESCRIPTION’ ... OK
• this is package ‘ecostats’ version ‘1.2.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ecostats’ can be installed ... [20s/54s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [5s/15s] OK
• checking whether the package can be loaded with stated dependencies ... [5s/14s] OK
• checking whether the package can be unloaded cleanly ... [5s/13s] OK
• checking whether the namespace can be loaded with stated dependencies ... [5s/13s] OK
• checking whether the namespace can be unloaded cleanly ... [5s/11s] OK
• checking loading without being on the library search path ... [5s/12s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [29s/75s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [26s/71s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [5m/13m] ERROR Error(s) in re-building vignettes: --- re-building ‘Chapter10Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter10Solutions.Rmd’ --- re-building ‘Chapter11Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter11Solutions.Rmd’ --- re-building ‘Chapter12Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter12Solutions.Rmd’ --- re-building ‘Chapter13Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.3-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33249 bytes Input file size = 33375 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25542   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25542 Output IDAT size = 25542 bytes (7707 bytes decrease) Output file size = 25620 bytes (7755 bytes = 23.24% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.5-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35853 bytes Input file size = 35979 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27814   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27814 Output IDAT size = 27814 bytes (8039 bytes decrease) Output file size = 27892 bytes (8087 bytes = 22.48% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.6-1.png 576x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29834 bytes Input file size = 29948 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23479   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23479 Output IDAT size = 23479 bytes (6355 bytes decrease) Output file size = 23557 bytes (6391 bytes = 21.34% decrease) --- finished re-building ‘Chapter13Solutions.Rmd’ --- re-building ‘Chapter14Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter14Solutions.Rmd’ --- re-building ‘Chapter15Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter15Solutions.Rmd’ --- re-building ‘Chapter16Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter16Solutions.Rmd’ --- re-building ‘Chapter17Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.1-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 55904 bytes Input file size = 56054 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44530   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44530 Output IDAT size = 44530 bytes (11374 bytes decrease) Output file size = 44608 bytes (11446 bytes = 20.42% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.2-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49863 bytes Input file size = 50013 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40442   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40442 Output IDAT size = 40442 bytes (9421 bytes decrease) Output file size = 40520 bytes (9493 bytes = 18.98% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.2-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 57200 bytes Input file size = 57350 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45287   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45287 Output IDAT size = 45287 bytes (11913 bytes decrease) Output file size = 45365 bytes (11985 bytes = 20.90% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.2variation-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46239 bytes Input file size = 46377 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37533   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37533 Output IDAT size = 37533 bytes (8706 bytes decrease) Output file size = 37611 bytes (8766 bytes = 18.90% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.3cord-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 88031 bytes Input file size = 88229 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 67406   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 67406 Output IDAT size = 67406 bytes (20625 bytes decrease) Output file size = 67484 bytes (20745 bytes = 23.51% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.3X-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 84703 bytes Input file size = 84901 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 65000   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 65000 Output IDAT size = 65000 bytes (19703 bytes decrease) Output file size = 65078 bytes (19823 bytes = 23.35% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.3-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 63049 bytes Input file size = 63211 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 42173   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 42173 Output IDAT size = 42173 bytes (20876 bytes decrease) Output file size = 42251 bytes (20960 bytes = 33.16% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.4-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39535 bytes Input file size = 39661 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32760   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32760 Output IDAT size = 32760 bytes (6775 bytes decrease) Output file size = 32838 bytes (6823 bytes = 17.20% decrease) --- finished re-building ‘Chapter17Solutions.Rmd’ --- re-building ‘Chapter1Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/proptest graph-1.png 480x288 pixels, 8 bits/pixel, 244 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2638 bytes Input file size = 3460 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2169   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2152   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2152 Output IDAT size = 2152 bytes (486 bytes decrease) Output file size = 2230 bytes (1230 bytes = 35.55% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/ravens plot-1.png 480x288 pixels, 8 bits/pixel, 234 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2701 bytes Input file size = 3493 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2172   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2172 Output IDAT size = 2172 bytes (529 bytes decrease) Output file size = 2250 bytes (1243 bytes = 35.59% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/guineapigs plot-1.png 576x288 pixels, 8 bits/pixel, 242 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2974 bytes Input file size = 3790 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2525   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2525   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2525 Output IDAT size = 2525 bytes (449 bytes decrease) Output file size = 2603 bytes (1187 bytes = 31.32% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/Code 1.2-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26350 bytes Input file size = 26464 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21460   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21460 Output IDAT size = 21460 bytes (4890 bytes decrease) Output file size = 21538 bytes (4926 bytes = 18.61% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/Code 1.3-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15856 bytes Input file size = 15946 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12328   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12328 Output IDAT size = 12328 bytes (3528 bytes decrease) Output file size = 12406 bytes (3540 bytes = 22.20% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/global plants-1.png 384x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6537 bytes Input file size = 7395 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5928   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5898   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5898 Output IDAT size = 5898 bytes (639 bytes decrease) Output file size = 5976 bytes (1419 bytes = 19.19% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/global plants logHt-1.png 384x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6495 bytes Input file size = 7353 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5760   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5734   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5734 Output IDAT size = 5734 bytes (761 bytes decrease) Output file size = 5812 bytes (1541 bytes = 20.96% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/seaweed plot-1.png 384x384 pixels, 8 bits/pixel, 242 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3503 bytes Input file size = 4319 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2836   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2836 Output IDAT size = 2836 bytes (667 bytes decrease) Output file size = 2914 bytes (1405 bytes = 32.53% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/seaweed transform-1.png 768x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11085 bytes Input file size = 11955 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9869   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9810   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9810 Output IDAT size = 9810 bytes (1275 bytes decrease) Output file size = 9888 bytes (2067 bytes = 17.29% decrease) --- finished re-building ‘Chapter1Solutions.Rmd’ --- re-building ‘Chapter2Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapig qqplots-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14665 bytes Input file size = 14755 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10903   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10903 Output IDAT size = 10903 bytes (3762 bytes decrease) Output file size = 10981 bytes (3774 bytes = 25.58% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapig qqplots-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14729 bytes Input file size = 14819 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10867   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10867 Output IDAT size = 10867 bytes (3862 bytes decrease) Output file size = 10945 bytes (3874 bytes = 26.14% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality scatterplot-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5049 bytes Input file size = 5904 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4487   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4464   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4464 Output IDAT size = 4464 bytes (585 bytes decrease) Output file size = 4542 bytes (1362 bytes = 23.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality resplots-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17502 bytes Input file size = 17604 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12625   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12625 Output IDAT size = 12625 bytes (4877 bytes decrease) Output file size = 12703 bytes (4901 bytes = 27.84% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality resplots-2.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7163 bytes Input file size = 8021 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6650   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6544   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6544 Output IDAT size = 6544 bytes (619 bytes decrease) Output file size = 6622 bytes (1399 bytes = 17.44% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality simenvelope-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14266 bytes Input file size = 14356 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10583   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10583 Output IDAT size = 10583 bytes (3683 bytes decrease) Output file size = 10661 bytes (3695 bytes = 25.74% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality simenvelope-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13376 bytes Input file size = 13466 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10038   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10038 Output IDAT size = 10038 bytes (3338 bytes decrease) Output file size = 10116 bytes (3350 bytes = 24.88% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7361 bytes Input file size = 8219 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6792   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6733   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6733 Output IDAT size = 6733 bytes (628 bytes decrease) Output file size = 6811 bytes (1408 bytes = 17.13% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20516 bytes Input file size = 20618 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14501   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14501 Output IDAT size = 14501 bytes (6015 bytes decrease) Output file size = 14579 bytes (6039 bytes = 29.29% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14473 bytes Input file size = 14563 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10674   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10674 Output IDAT size = 10674 bytes (3799 bytes decrease) Output file size = 10752 bytes (3811 bytes = 26.17% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9401 bytes Input file size = 10271 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8765   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8656   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8656 Output IDAT size = 8656 bytes (745 bytes decrease) Output file size = 8734 bytes (1537 bytes = 14.96% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25111 bytes Input file size = 25225 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17738   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17738 Output IDAT size = 17738 bytes (7373 bytes decrease) Output file size = 17816 bytes (7409 bytes = 29.37% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14956 bytes Input file size = 15046 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11173   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11173 Output IDAT size = 11173 bytes (3783 bytes decrease) Output file size = 11251 bytes (3795 bytes = 25.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12707 bytes Input file size = 12797 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9422   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9422 Output IDAT size = 9422 bytes (3285 bytes decrease) Output file size = 9500 bytes (3297 bytes = 25.76% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14225 bytes Input file size = 14315 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10568   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10568 Output IDAT size = 10568 bytes (3657 bytes decrease) Output file size = 10646 bytes (3669 bytes = 25.63% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform slplot-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14435 bytes Input file size = 14525 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10794   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10794 Output IDAT size = 10794 bytes (3641 bytes decrease) Output file size = 10872 bytes (3653 bytes = 25.15% decrease) --- finished re-building ‘Chapter2Solutions.Rmd’ --- re-building ‘Chapter3Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter3Solutions.Rmd’ --- re-building ‘Chapter4Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter4Solutions.Rmd’ --- re-building ‘Chapter5Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter5Solutions.Rmd’ --- re-building ‘Chapter6Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter6Solutions_files/figure-html/fig6.1-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16554 bytes Input file size = 16656 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12889   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12889 Output IDAT size = 12889 bytes (3665 bytes decrease) Output file size = 12967 bytes (3689 bytes = 22.15% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter6Solutions_files/figure-html/code62-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31444 bytes Input file size = 31558 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24705   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24705 Output IDAT size = 24705 bytes (6739 bytes decrease) Output file size = 24783 bytes (6775 bytes = 21.47% decrease) Quitting from lines 80-81 [code64] (Chapter6Solutions.Rmd) Error: processing vignette 'Chapter6Solutions.Rmd' failed with diagnostics: Profiling over both the residual variance and fixed effects is not numerically consistent with profiling over the fixed effects only (relative difference: 1); consider adjusting devmatchtol --- failed re-building ‘Chapter6Solutions.Rmd’ --- re-building ‘Chapter7Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter7Solutions.Rmd’ --- re-building ‘Chapter8Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box82-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24559 bytes Input file size = 24661 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17849   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17849 Output IDAT size = 17849 bytes (6710 bytes decrease) Output file size = 17927 bytes (6734 bytes = 27.31% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box82-2.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20060 bytes Input file size = 20162 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15134   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15134 Output IDAT size = 15134 bytes (4926 bytes decrease) Output file size = 15212 bytes (4950 bytes = 24.55% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box84-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 58111 bytes Input file size = 58273 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49399   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49399 Output IDAT size = 49399 bytes (8712 bytes decrease) Output file size = 49477 bytes (8796 bytes = 15.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box85-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35038 bytes Input file size = 35164 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24590   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24590 Output IDAT size = 24590 bytes (10448 bytes decrease) Output file size = 24668 bytes (10496 bytes = 29.85% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box85-2.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28119 bytes Input file size = 28233 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19458   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19458 Output IDAT size = 19458 bytes (8661 bytes decrease) Output file size = 19536 bytes (8697 bytes = 30.80% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box86-1.png 672x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24383 bytes Input file size = 24485 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20155   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20155 Output IDAT size = 20155 bytes (4228 bytes decrease) Output file size = 20233 bytes (4252 bytes = 17.37% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box87-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 30890 bytes Input file size = 31784 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29983   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 29385   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 28884   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 28504   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 28504 Output IDAT size = 28504 bytes (2386 bytes decrease) Output file size = 28582 bytes (3202 bytes = 10.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box87 sim-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 33270 bytes Input file size = 34176 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32550   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 31656   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 30601   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 30151   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 30151 Output IDAT size = 30151 bytes (3119 bytes decrease) Output file size = 30229 bytes (3947 bytes = 11.55% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box88-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 32345 bytes Input file size = 33239 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31356   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30806   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30806 Output IDAT size = 30806 bytes (1539 bytes decrease) Output file size = 30884 bytes (2355 bytes = 7.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box89-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13625 bytes Input file size = 13715 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10768   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10768 Output IDAT size = 10768 bytes (2857 bytes decrease) Output file size = 10846 bytes (2869 bytes = 20.92% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box89-2.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13992 bytes Input file size = 14082 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10849   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10849 Output IDAT size = 10849 bytes (3143 bytes decrease) Output file size = 10927 bytes (3155 bytes = 22.40% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex86-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 32203 bytes Input file size = 33097 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31273   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30739   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30739 Output IDAT size = 30739 bytes (1464 bytes decrease) Output file size = 30817 bytes (2280 bytes = 6.89% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex87-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12364 bytes Input file size = 12454 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9756   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9756 Output IDAT size = 9756 bytes (2608 bytes decrease) Output file size = 9834 bytes (2620 bytes = 21.04% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex87-2.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13512 bytes Input file size = 13602 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10603   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10603 Output IDAT size = 10603 bytes (2909 bytes decrease) Output file size = 10681 bytes (2921 bytes = 21.47% decrease) --- finished re-building ‘Chapter8Solutions.Rmd’ --- re-building ‘Chapter9Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter9Solutions.Rmd’ --- re-building ‘ecostats.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/unnamed-chunk-1-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 98682 bytes Input file size = 98904 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 80961   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 80961 Output IDAT size = 80961 bytes (17721 bytes decrease) Output file size = 81039 bytes (17865 bytes = 18.06% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/unnamed-chunk-2-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17253 bytes Input file size = 17355 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13034   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13034 Output IDAT size = 13034 bytes (4219 bytes decrease) Output file size = 13112 bytes (4243 bytes = 24.45% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/aphidData-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32824 bytes Input file size = 32950 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25167   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25167 Output IDAT size = 25167 bytes (7657 bytes decrease) Output file size = 25245 bytes (7705 bytes = 23.38% decrease) --- finished re-building ‘ecostats.Rmd’ SUMMARY: processing the following file failed:   ‘Chapter6Solutions.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [8s/22s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR