• using R Under development (unstable) (2025-02-20 r87771)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 20.1.0-rc2     flang version 20.1.0-rc2
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘ebvcube/DESCRIPTION’ ... OK
• this is package ‘ebvcube’ version ‘0.3.3’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ebvcube’ can be installed ... [14s/28s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [34s/90s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [64s/114s] ERROR   Running ‘testthat.R’ [64s/113s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/tests.html   > # * https://testthat.r-lib.org/reference/test_package.html#special-files   >   > library(testthat)   > library(ebvcube)   >   > test_check("ebvcube")   [ FAIL 9 | WARN 0 | SKIP 0 | PASS 194 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-plots.R:4:3'): test ebv_trend mean ─────────────────────────────   Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet   Backtrace:       ▆    1. ├─ebvcube::ebv_trend(file, "metric_1/ebv_cube", 1, "mean", verbose = FALSE) at test-plots.R:4:3    2. │ ├─base::replace(data.all, data.all == fillvalue, c(NA))    3. │ │ └─methods (local) `[<-`(`*tmp*`, list, value = `<lgl>`)    4. │ ├─data.all == fillvalue    5. │ └─data.all == fillvalue    6. │ └─base::stop(...)    7. └─base::.handleSimpleError(...)    8. └─base (local) h(simpleError(msg, call))   ── Error ('test-plots.R:27:3'): test ebv_trend min ─────────────────────────────   Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet   Backtrace:       ▆    1. ├─ebvcube::ebv_trend(file, "metric_1/ebv_cube", 1, "min", verbose = FALSE) at test-plots.R:27:3    2. │ ├─base::replace(data.all, data.all == fillvalue, c(NA))    3. │ │ └─methods (local) `[<-`(`*tmp*`, list, value = `<lgl>`)    4. │ ├─data.all == fillvalue    5. │ └─data.all == fillvalue    6. │ └─base::stop(...)    7. └─base::.handleSimpleError(...)    8. └─base (local) h(simpleError(msg, call))   ── Error ('test-plots.R:37:3'): test ebv_trend max ─────────────────────────────   Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet   Backtrace:       ▆    1. ├─ebvcube::ebv_trend(...) at test-plots.R:37:3    2. │ ├─base::replace(data.all, data.all == fillvalue, c(NA))    3. │ │ └─methods (local) `[<-`(`*tmp*`, list, value = `<lgl>`)    4. │ ├─data.all == fillvalue    5. │ └─data.all == fillvalue    6. │ └─base::stop(...)    7. └─base::.handleSimpleError(...)    8. └─base (local) h(simpleError(msg, call))   ── Error ('test-plots.R:47:3'): test ebv_trend boxplot ─────────────────────────   Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet   Backtrace:       ▆    1. ├─ebvcube::ebv_trend(...) at test-plots.R:47:3    2. │ ├─base::replace(data.all, data.all == fillvalue, c(NA))    3. │ │ └─methods (local) `[<-`(`*tmp*`, list, value = `<lgl>`)    4. │ ├─data.all == fillvalue    5. │ └─data.all == fillvalue    6. │ └─base::stop(...)    7. └─base::.handleSimpleError(...)    8. └─base (local) h(simpleError(msg, call))   ── Error ('test-plots.R:57:3'): test ebv_trend metric ──────────────────────────   Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet   Backtrace:       ▆    1. ├─ebvcube::ebv_trend(...) at test-plots.R:57:3    2. │ ├─base::replace(data.all, data.all == fillvalue, c(NA))    3. │ │ └─methods (local) `[<-`(`*tmp*`, list, value = `<lgl>`)    4. │ ├─data.all == fillvalue    5. │ └─data.all == fillvalue    6. │ └─base::stop(...)    7. └─base::.handleSimpleError(...)    8. └─base (local) h(simpleError(msg, call))   ── Error ('test-plots.R:69:3'): test ebv_map 1 ─────────────────────────────────   Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet   Backtrace:       ▆    1. ├─ebvcube::ebv_map(...) at test-plots.R:69:3    2. │ ├─methods (local) `[<-`(`*tmp*`, data.all == nodata, value = `<lgl>`)    3. │ ├─data.all == nodata    4. │ └─data.all == nodata    5. │ └─base::stop(...)    6. └─base::.handleSimpleError(...)    7. └─base (local) h(simpleError(msg, call))   ── Error ('test-plots.R:82:3'): test ebv_map: col_rev ──────────────────────────   Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet   Backtrace:       ▆    1. ├─ebvcube::ebv_map(...) at test-plots.R:82:3    2. │ ├─methods (local) `[<-`(`*tmp*`, data.all == nodata, value = `<lgl>`)    3. │ ├─data.all == nodata    4. │ └─data.all == nodata    5. │ └─base::stop(...)    6. └─base::.handleSimpleError(...)    7. └─base (local) h(simpleError(msg, call))   ── Error ('test-plots.R:97:3'): test ebv_map: no countries, one class only ─────   Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet   Backtrace:       ▆    1. ├─ebvcube::ebv_map(...) at test-plots.R:97:3    2. │ ├─methods (local) `[<-`(`*tmp*`, data.all == nodata, value = `<lgl>`)    3. │ ├─data.all == nodata    4. │ └─data.all == nodata    5. │ └─base::stop(...)    6. └─base::.handleSimpleError(...)    7. └─base (local) h(simpleError(msg, call))   ── Error ('test-write.R:35:3'): test ebv_write and ebv_read DelayedMatrix Array ──   Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet   Backtrace:       ▆    1. ├─ebvcube::ebv_read(...) at test-write.R:35:3    2. │ ├─base::replace(h5array, h5array == fillvalue, c(NA))    3. │ │ └─methods (local) `[<-`(`*tmp*`, list, value = `<lgl>`)    4. │ ├─h5array == fillvalue    5. │ └─h5array == fillvalue    6. │ └─base::stop(...)    7. └─base::.handleSimpleError(...)    8. └─base (local) h(simpleError(msg, call))      [ FAIL 9 | WARN 0 | SKIP 0 | PASS 194 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [8s/18s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR