• using R Under development (unstable) (2025-02-20 r87772)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 20.1.0-rc2     flang version 20.1.0-rc2
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘duckdbfs/DESCRIPTION’ ... OK
• this is package ‘duckdbfs’ version ‘0.0.9’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘duckdbfs’ can be installed ... [4s/13s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... NOTE   Missing dependency on R >= 4.1.0 because package code uses the pipe   |> or function shorthand \(...) syntax added in R 4.1.0.   File(s) using such syntax:     ‘to_sf.R’
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/25s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [9s/43s] ERROR   Running ‘spelling.R’   Running ‘testthat.R’ [8s/40s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/tests.html   > # * https://testthat.r-lib.org/reference/test_package.html#special-files   >   > library(testthat)   > library(duckdbfs)   >   >   >   >   > test_check("duckdbfs")   [ FAIL 1 | WARN 0 | SKIP 12 | PASS 15 ]      ══ Skipped tests (12) ══════════════════════════════════════════════════════════   • On CRAN (12): 'test-open_dataset.R:16:3', 'test-open_dataset.R:37:3',     'test-open_dataset.R:60:3', 'test-open_dataset.R:71:3', 'test-spatial.R:4:3',     'test-spatial.R:22:3', 'test-spatial.R:43:3', 'test-spatial.R:74:3',     'test-write_dataset.R:6:3', 'test-write_dataset.R:37:3',     'test-write_dataset.R:62:3', 'test-write_dataset.R:81:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-load_extension.R:4:3'): extensions installation ────────────────   Error in `duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)`: rapi_execute: Failed to run query   Error: Invalid Input Error: Initialization function "httpfs_init" from file "/data/gannet/ripley/.local/share/R/duckdb/extensions/v1.2.0/linux_amd64_gcc4/httpfs.duckdb_extension" threw an exception: "Attempted to dereference unique_ptr that is NULL!"   Backtrace:        ▆     1. ├─duckdbfs:::load_httpfs(nightly = FALSE, force = FALSE) at test-load_extension.R:4:3     2. │ └─duckdbfs:::load_extension(...)     3. │ ├─DBI::dbExecute(conn, glue::glue("LOAD '{extension}';"))     4. │ └─DBI::dbExecute(conn, glue::glue("LOAD '{extension}';"))     5. │ ├─DBI::dbSendStatement(conn, statement, ...)     6. │ └─DBI::dbSendStatement(conn, statement, ...)     7. │ ├─DBI::dbSendQuery(conn, statement, ...)     8. │ └─duckdb::dbSendQuery(conn, statement, ...)     9. │ └─duckdb (local) .local(conn, statement, ...)    10. │ └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)    11. │ └─duckdb:::duckdb_execute(res)    12. │ └─duckdb:::rethrow_rapi_execute(...)    13. │ ├─rlang::try_fetch(...)    14. │ │ ├─base::tryCatch(...)    15. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)    16. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    17. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)    18. │ │ └─base::withCallingHandlers(...)    19. │ └─duckdb:::rapi_execute(stmt, arrow, integer64)    20. └─base::.handleSimpleError(...)    21. └─rlang (local) h(simpleError(msg, call))    22. └─handlers[[1L]](cnd)    23. └─duckdb:::rethrow_error_from_rapi(e, call)    24. └─rlang::abort(msg, call = call)      [ FAIL 1 | WARN 0 | SKIP 12 | PASS 15 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [7s/35s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE