* installing *source* package ‘dti’ ...
** package ‘dti’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.3’
using Fortran compiler: ‘flang-new version 19.1.3’
using C++ compiler: ‘clang version 19.1.3’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/dti/src'
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Converter.cpp -o Converter.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Fiber.cpp -o Fiber.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Fibertracking.cpp -o Fibertracking.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c LawsonHansonnnls.f -o LawsonHansonnnls.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c TrackingInterface.cpp -o TrackingInterface.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Vector.cpp -o Vector.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c VectorList.cpp -o VectorList.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -DR_NO_REMAP -c Voxel.cpp -o Voxel.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c aniso.f -o aniso.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c awsvar.f -o awsvar.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bessel.c -o bessel.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c bmixtensorpl.c -o bmixtensorpl.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c dtifull.f -o dtifull.o
./dtifull.f:153:16: warning: Reference to the procedure 'eigen3' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object shapes
call eigen3(thnew(1,i1,i2,i3),ew,ev,ierr)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dtifull.f:61:16: previous reference to 'eigen3'
call eigen3(thi,ew,ev,ierr)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dtifull.f:232:16: warning: Reference to the procedure 'eigen3' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object shapes
call eigen3(th(1,i1,i2,i3),ew,ev,ierr)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dtifull.f:61:16: previous reference to 'eigen3'
call eigen3(thi,ew,ev,ierr)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c dtinraw2.f -o dtinraw2.o
./dtinraw2.f:164:16: warning: Reference to the procedure 'eigen3' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object shapes
call eigen3(thi,ew,ev,ierr)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dtinraw2.f:11:7: previous reference to 'eigen3'
call eigen3(D,ew,ev,ierr)
^^^^^^^^^^^^^^^^^^^^^^^^^
./dtinraw2.f:298:16: warning: Reference to the procedure 'eigen3' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object shapes
call eigen3(Dn(1,i1,i2,i3),ew,ev,ierr)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./dtinraw2.f:11:7: previous reference to 'eigen3'
call eigen3(D,ew,ev,ierr)
^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c fibers.f -o fibers.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c misc.f -o misc.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c mixtenbv.f -o mixtenbv.o
./mixtenbv.f:416:13: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(ngrad,z0,1,z(1,1),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtenbv.f:415:13: previous reference to 'dcopy'
call dcopy(ngrad,si(1,i),1,sms,1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtenbv.f:418:17: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
call dcopy(ngrad,egrad(1,isample(l,k)),1,z(1,l+1),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtenbv.f:415:13: previous reference to 'dcopy'
call dcopy(ngrad,si(1,i),1,sms,1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtenbv.f:519:13: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(ngrad,z0,1,z(1,1),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtenbv.f:415:13: previous reference to 'dcopy'
call dcopy(ngrad,si(1,i),1,sms,1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtenbv.f:521:16: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #4: incompatible dummy data object shapes
call dcopy(ngrad,egrad(1,isample(l,k)),1,z(1,l+1),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtenbv.f:415:13: previous reference to 'dcopy'
call dcopy(ngrad,si(1,i),1,sms,1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c mixtens.f -o mixtens.o
./mixtens.f:424:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(n*m,z,1,work1,1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:270:7: previous reference to 'dcopy'
call dcopy(n,siq,1,w,1)
^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:425:7: warning: Reference to the procedure 'dgelsy' has an implicit interface that is distinct from another reference: incompatible dummy argument #8: incompatible dummy data object shapes
call dgelsy(n,m,1,work1,n,w,n,jpvt,1d-8,rank,work,25,mode)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:271:7: previous reference to 'dgelsy'
call dgelsy(n,m,1,z,n,w,n,jpvt,1d-8,rank,work,25,
^
./mixtens.f:484:7: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(m*lpar,dwdpars,1,dwdpars2,1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:270:7: previous reference to 'dcopy'
call dcopy(n,siq,1,w,1)
^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:620:19: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(ngrad,si(1,i),1,sms,1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:270:7: previous reference to 'dcopy'
call dcopy(n,siq,1,w,1)
^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:622:21: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(ngrad,egrad(1,isample(l,k)),1,z(1,l),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:270:7: previous reference to 'dcopy'
call dcopy(n,siq,1,w,1)
^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:725:16: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(ngrad,si(1,i),1,sms,1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:270:7: previous reference to 'dcopy'
call dcopy(n,siq,1,w,1)
^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:727:19: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(ngrad,egrad(1,isample(l,k)),1,z(1,l),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:270:7: previous reference to 'dcopy'
call dcopy(n,siq,1,w,1)
^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:848:19: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(ngrad,si(1,i),1,sms,1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:270:7: previous reference to 'dcopy'
call dcopy(n,siq,1,w,1)
^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:852:25: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(ngrad,egrad(1,is(l)),1,z(1,l),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:270:7: previous reference to 'dcopy'
call dcopy(n,siq,1,w,1)
^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:856:19: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(ngrad,egrad(1,is(m)),1,z(1,m),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:270:7: previous reference to 'dcopy'
call dcopy(n,siq,1,w,1)
^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:969:16: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(ngrad,si(1,i),1,sms,1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:270:7: previous reference to 'dcopy'
call dcopy(n,siq,1,w,1)
^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:973:22: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(ngrad,egrad(1,is(l)),1,z(1,l),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:270:7: previous reference to 'dcopy'
call dcopy(n,siq,1,w,1)
^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:977:16: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy(ngrad,egrad(1,is(m)),1,z(1,m),1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./mixtens.f:270:7: previous reference to 'dcopy'
call dcopy(n,siq,1,w,1)
^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c mixtensl.f -o mixtensl.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mixtensorpl.c -o mixtensorpl.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c nlrdtirg.f -o nlrdtirg.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c rice.f -o rice.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c show3d.f -o show3d.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c smse3.f -o smse3.o
/usr/local/clang19/bin/flang-new -fpic -O2 -pedantic -c tensor.f -o tensor.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c tensorc.c -o tensorc.o
/usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o dti.so Converter.o Fiber.o Fibertracking.o LawsonHansonnnls.o TrackingInterface.o Vector.o VectorList.o Voxel.o aniso.o awsvar.o bessel.o bmixtensorpl.o dtifull.o dtinraw2.o fibers.o init.o misc.o mixtenbv.o mixtens.o mixtensl.o mixtensorpl.o nlrdtirg.o rice.o show3d.o smse3.o tensor.o tensorc.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortranRuntime -lFortranDecimal -lm -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/dti/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/dti/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/dti/src'
installing to /data/gannet/ripley/R/packages/tests-clang/dti.Rcheck/00LOCK-dti/00new/dti/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dti)