Install log for 'divo'

* installing *source* package ‘divo’ ...
** this is package ‘divo’ version ‘1.0.1’
** package ‘divo’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.7’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/divo/src'
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c DP_HT.c -o DP_HT.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c DP_RE.c -o DP_RE.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c DP_SH.c -o DP_SH.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c DP_confidence_interval.c -o DP_confidence_interval.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c DP_cvg.c -o DP_cvg.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c DP_draw_arrays.c -o DP_draw_arrays.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c DP_read.c -o DP_read.o
DP_read.c:194:10: warning: variable 'Sum_dat' set but not used [-Wunused-but-set-variable]
  194 |                 double Sum_dat=0;for (int i=0; i<nX ;i++){Sum_dat += ptrX[i];}
      |                        ^
DP_read.c:56:10: warning: variable 'ptrAlpha' set but not used [-Wunused-but-set-variable]
   56 |         double *ptrAlpha; ptrAlpha = REAL(Alpha);
      |                 ^
DP_read.c:119:6: warning: variable 'nOutMin' set but not used [-Wunused-but-set-variable]
  119 |         int nOutMin; nOutMin = ptrdimOutMin[0] * ptrdimOutMin[1];
      |             ^
DP_read.c:131:6: warning: variable 'nOutMax' set but not used [-Wunused-but-set-variable]
  131 |         int nOutMax; nOutMax = ptrdimOutMax[0] * ptrdimOutMax[1];
      |             ^
DP_read.c:136:6: warning: variable 'nOutCvg' set but not used [-Wunused-but-set-variable]
  136 |         int nOutCvg; nOutCvg=length(OutCvg);
      |             ^
5 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c DP_saveBootstrap.c -o DP_saveBootstrap.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c DP_single_population.c -o DP_single_population.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c DP_single_population_HT.c -o DP_single_population_HT.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c DP_single_population_HT_cvg.c -o DP_single_population_HT_cvg.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c DP_single_population_cvg.c -o DP_single_population_cvg.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_I_Index.c -o OL_I_Index.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_I_Index_pooled.c -o OL_I_Index_pooled.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_JI.c -o OL_JI.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_LI.c -o OL_LI.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_MH.c -o OL_MH.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_PG.c -o OL_PG.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_PG_HT.c -o OL_PG_HT.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_RD.c -o OL_RD.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_RDS.c -o OL_RDS.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_SH.c -o OL_SH.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_SH2.c -o OL_SH2.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_confidence_interval.c -o OL_confidence_interval.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_confidence_interval_IN.c -o OL_confidence_interval_IN.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_cvg.c -o OL_cvg.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_cvg_IN.c -o OL_cvg_IN.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_draw_arrays.c -o OL_draw_arrays.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_read.c -o OL_read.o
OL_read.c:128:6: warning: variable 'nOutMean' set but not used [-Wunused-but-set-variable]
  128 |         int nOutMean; nOutMean = ptrdimOutMean[0] * ptrdimOutMean[1];
      |             ^
OL_read.c:140:6: warning: variable 'nOutMin' set but not used [-Wunused-but-set-variable]
  140 |         int nOutMin; nOutMin = ptrdimOutMin[0] * ptrdimOutMin[1];
      |             ^
OL_read.c:152:6: warning: variable 'nOutMax' set but not used [-Wunused-but-set-variable]
  152 |         int nOutMax; nOutMax = ptrdimOutMax[0] * ptrdimOutMax[1];
      |             ^
OL_read.c:157:6: warning: variable 'nOutCvg' set but not used [-Wunused-but-set-variable]
  157 |         int nOutCvg; nOutCvg=length(OutCvg);
      |             ^
4 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c OL_saveBootstrap.c -o OL_saveBootstrap.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c divo.c -o divo.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang19/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c nrutil.c -o nrutil.o
/usr/local/clang19/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o divo.so DP_HT.o DP_RE.o DP_SH.o DP_confidence_interval.o DP_cvg.o DP_draw_arrays.o DP_read.o DP_saveBootstrap.o DP_single_population.o DP_single_population_HT.o DP_single_population_HT_cvg.o DP_single_population_cvg.o OL_I_Index.o OL_I_Index_pooled.o OL_JI.o OL_LI.o OL_MH.o OL_PG.o OL_PG_HT.o OL_RD.o OL_RDS.o OL_SH.o OL_SH2.o OL_confidence_interval.o OL_confidence_interval_IN.o OL_cvg.o OL_cvg_IN.o OL_draw_arrays.o OL_read.o OL_saveBootstrap.o divo.o nrutil.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/divo/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/divo/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/divo/src'
installing to /data/gannet/ripley/R/packages/tests-clang/divo.Rcheck/00LOCK-divo/00new/divo/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (divo)